Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4724g00059 ATGAATTCCCTTCTTTTCCTCCTTCCTCTGTTTCTATTGGTTGCATTTCCCAGTCCGCAACCGGTTCATGGAAATGCAGAGTTCAGAGCACTCATGGACTTGAAATCCTCTCTTGACCCAGAAGACAAGCTCCTTGAATCGTGGACCACTGATGGTGATCCATGCAGTGGTTCTTTCTTGGGGGTTGCATGCAACGAGCACCACAAAGTGGCCAATATATCGTTGGCCGGAAGGGCTCTTTCCGGCAGGCTCTCTCCGGCGGTGGCTGAACTCAAATGCTTGTCAGGTTTATACCTGAATCACAATCATCTGTCAGGGGAGATACCGAGAGAGATTTCAAATCTCAATGAATTGGTCGATCTTTATCTCAACGTGAATAATCTATCTGGAAGCATTCCTCCAGAGATCGGGAACCTGACTAGCCTCCAAGTGCTGCAGTTAGGCTATAACCAGCTAGTGGAGAACATACCTGAGCAGATGGGTTCGTTGAAGCAGCTTAATGCTCTTGCTTTGGAAAATAACAGTTTAACGGGTCAAATTCCTCTAAGCTTGGGAAACTTGGAGATGCTAAGGAGGCTAAATTTGAGCTTTAACAACTTCAGTGGTGTGATTCCCGCAACACTAGCTTCCATTGAGCACTTGGAATTTCTAGATATCCAAAACAATTCTCTTACAGGGACTGTTCCTTCTGCATTGAGGAGATTACGTGAAGGATTCCAAGGTGCAAACAACCCAGGTCTCTGTGGAGCTGGGTTTTCTACTTTGAGAGCTTGCAAAAATAATGAATTTTATGTTAGCCAGATTGGTAACTCAAATAATGTATCCATATACAATAATCCTCCAGAAAATTTCCCGAAGCCTGCAAATAGCCAGTTGCATTGTAACCAGAGCCATTGCTCAAAATCAAGAAGGCTTTCTCATACTATTATTGAAGCAAGTGTTATCACTATCACTATCACTATCATTTTCATAGGTGCCGGATTTTTCATTTTTGTCAGATATCGCCGCCAAAGACAGAGGGTTAGGAATACATCAGATTCTTCTGAAGGCCAACTTAGTCCTAACCAGCCTAAAGAGTTTTACAGAAGAAGTCCATCTCCACTTGTTAATCTTGAGTTTTATTATAATGGATGGGATTCATTGGCTGATGGTCAAAATGCCAGTGGATTATACAATGAATATTTAAACTATTTTAGGTTTAATGTTGATGAGGTTGAATCAGCAACACAGTACTTTTCGGAGGCCAATTTATTGGGTAAGAGCAAATTCTTAGCAGTCTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTGGCTATTAGAAGCATTAGTGTGACATGCTGCAAAACTGAGGAAGCTGAACTTGTAAAGGGATTGAGCATATTAACCTCACTGAGACATGAAAACATTGTTAAGATGAGAGGTTTCTGTTGCTCAAGGAGTAGAGGTGAATGCTTTCTTATCTATGACTTTGCCACAAGGGGTAAACTGTCTCAATATCTTGACATGGAAGATAAAGCAATTTCTTTAAAAAAAGAAGAGCAAGCCACCCATATGCTTGAGTGGTCTATGAGGGTTTCTATTATCAGGGGCATTGCAAAAGGTATAGAGTATCTGCACAGCAATGAAGCTAGCAAACCTACAATAGTACACCAAAATATTTCAGTTGAAAAAGTTCTTCTTGACCATCAATTTAACCCATTGATCATGGATGCTGGCCTCCCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCACTGAAAGTAAGTGCTGCCATGGGATACCTAGCTCCTGAATATATTACTACTGGACGCTTTACTGAAAAGAGTGACATATACGCATTTGGGGTTATTATTCTTCAAGTTCTATCTGGGAAGACAACAATAGGGGGTTCAATCCGTATGGCAGTTGAATCATTCAGATTTGAAGATTTTGTTGACACAAATCTGAAGGGAATATATTCTAAATCTGAAGCAGCAATTCTTTCAAAGCTTGCAATCCTGTGCACTAATGAGCTTCCTGACCAAAGGCCAACCATGGTGGAATTGATTCAAGAGTTGAGCATGTTTCCTGCTCATTCTTCATGA 2085 0.4101 MNSLLFLLPLFLLVAFPSPQPVHGNAEFRALMDLKSSLDPEDKLLESWTTDGDPCSGSFLGVACNEHHKVANISLAGRALSGRLSPAVAELKCLSGLYLNHNHLSGEIPREISNLNELVDLYLNVNNLSGSIPPEIGNLTSLQVLQLGYNQLVENIPEQMGSLKQLNALALENNSLTGQIPLSLGNLEMLRRLNLSFNNFSGVIPATLASIEHLEFLDIQNNSLTGTVPSALRRLREGFQGANNPGLCGAGFSTLRACKNNEFYVSQIGNSNNVSIYNNPPENFPKPANSQLHCNQSHCSKSRRLSHTIIEASVITITITIIFIGAGFFIFVRYRRQRQRVRNTSDSSEGQLSPNQPKEFYRRSPSPLVNLEFYYNGWDSLADGQNASGLYNEYLNYFRFNVDEVESATQYFSEANLLGKSKFLAVYKGVLRDGSLVAIRSISVTCCKTEEAELVKGLSILTSLRHENIVKMRGFCCSRSRGECFLIYDFATRGKLSQYLDMEDKAISLKKEEQATHMLEWSMRVSIIRGIAKGIEYLHSNEASKPTIVHQNISVEKVLLDHQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIILQVLSGKTTIGGSIRMAVESFRFEDFVDTNLKGIYSKSEAAILSKLAILCTNELPDQRPTMVELIQELSMFPAHSS 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4724g00059 694 Gene3D Transferase(Phosphotransferase) domain 1 493 690 - -
Gabi4724g00059 694 Pfam Protein tyrosine and serine/threonine kinase 416 686 IPR001245 GO:0004672|GO:0006468
Gabi4724g00059 694 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Gabi4724g00059 694 SMART LRR_typ_2 187 210 IPR003591 -
Gabi4724g00059 694 SMART LRR_typ_2 139 163 IPR003591 -
Gabi4724g00059 694 SMART LRR_typ_2 211 234 IPR003591 -
Gabi4724g00059 694 SMART LRR_typ_2 91 115 IPR003591 -
Gabi4724g00059 694 FunFam Protein NSP-INTERACTING KINASE 2 24 173 - -
Gabi4724g00059 694 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Gabi4724g00059 694 SUPERFAMILY L domain-like 28 235 - -
Gabi4724g00059 694 MobiDBLite consensus disorder prediction 344 360 - -
Gabi4724g00059 694 Gene3D Ribonuclease Inhibitor 24 173 IPR032675 -
Gabi4724g00059 694 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 69 687 - -
Gabi4724g00059 694 FunFam Protein NSP-INTERACTING KINASE 2 383 490 - -
Gabi4724g00059 694 Gene3D Ribonuclease Inhibitor 174 245 IPR032675 -
Gabi4724g00059 694 FunFam Protein NSP-INTERACTING KINASE 2 491 690 - -
Gabi4724g00059 694 ProSiteProfiles Protein kinase domain profile. 412 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4724g00059 694 SUPERFAMILY Protein kinase-like (PK-like) 387 688 IPR011009 -
Gabi4724g00059 694 Gene3D Phosphorylase Kinase; domain 1 383 490 - -
Gabi4724g00059 694 MobiDBLite consensus disorder prediction 342 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4724g00059 Gabi-Chr4724 726365 729893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4724g00059 3 534 Miscellaneous Gene Families AT4G22730 54.927 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Gabi4724g00059 PK_Tyr_Ser-Thr 1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4724g00059 - - gmx:100784155 979.163