Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4724g00040 ATGGAGGCCAGTGGTGGCGTTAGTGGTGGCGTTACGGTGGTTGGATCGGATGCTCCGTCGGACTACCATGTAGCTCCGAGGACCGACAACCCAGCTCCGACAGGTGGATCGACGACACAGATTTCGGCGACGGCAACCCAAGTGAGTGCTCCTCCACCGCCGCCGCATACGGCGGCGGTGGCAGCGTCTCCGGCAGCCGCAAATATGCCGGTGAAGAAGAAGAGGGGTCGGCCGAGAAAGTATGCACCGGACGGGTCGGTGACCATGGCGCTGTCTCCTAAGCCTATATCTTCTTCAGCTCCGCTGCCGCCGGTGATCGATTTCTCGGCGGGGAAGCGCGGAAAAGTGAGGCCCGCTAGCTCAGTGAGCAAAGCCAAATTTGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACACCCCATATCATCACTGTTAATTCTGGGGAGGATGTTACTATGAAGGTAATATCTTTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCAAATGGTGTCATATCAAGCGTCACACTTCGTCAGCCTGATTCTTCTGGGGGCACATTGACATATGAGGGAAGGTTTGAAATTCTGTCTTTATCTGGCTCATTCATGCCAAGTGAAAGTGGAGGAACAAGAAGCAGATCTGGTGGCATGAGTGTTTCTTTAGCAAGTCCTGATGGACGTGTTGTAGGTGGGGGAGTAGCTGGTCTTCTAGTGGCTGCAAGTCCTGTGCAGGTCGTGGTAGGTAGTTTTCTGGCTGGAAACCAACATGAGCAGAAGCCAAGAAAACAGAAACATGAGGTTATATCAACTGTGACACCAACTGCAATTGTTCCCATCTCTACTCTTGACCCAATACCTATTCTCTCATCATCAACTTCCTTCCGTGGAGATAATTGGTCTGCTATGCCAGCAGATGCCAATAATAAGCCAACTGATATTAATGTGTCACTTCCTGGAGGGTAA 990 0.5081 MEASGGVSGGVTVVGSDAPSDYHVAPRTDNPAPTGGSTTQISATATQVSAPPPPPHTAAVAASPAAANMPVKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSAGKRGKVRPASSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISTVTPTAIVPISTLDPIPILSSSTSFRGDNWSAMPADANNKPTDINVSLPGG 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4724g00040 329 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 259 IPR005175 -
Gabi4724g00040 329 MobiDBLite consensus disorder prediction 309 323 - -
Gabi4724g00040 329 FunFam AT-hook motif nuclear-localized protein 1-like 146 276 - -
Gabi4724g00040 329 MobiDBLite consensus disorder prediction 309 329 - -
Gabi4724g00040 329 MobiDBLite consensus disorder prediction 31 47 - -
Gabi4724g00040 329 MobiDBLite consensus disorder prediction 1 86 - -
Gabi4724g00040 329 Gene3D - 146 278 - -
Gabi4724g00040 329 ProSiteProfiles PPC domain profile profile. 141 283 IPR005175 -
Gabi4724g00040 329 CDD DUF296 145 236 IPR005175 -
Gabi4724g00040 329 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 42 282 IPR039605 GO:0003680
Gabi4724g00040 329 SUPERFAMILY AF0104/ALDC/Ptd012-like 143 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4724g00040 Gabi-Chr4724 549407 554625 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4724g00040 1 326 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 60.623 1.31e-129 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4724g00040 - - gmx:100801730 518.464