Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4724g00017 ATGAACACATTTTCACATGTACCTCCAGGCTTTCGGTTTCATCCGACTGATGAAGAACTTGTCGATTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTCATCAAAGATGTTGATCTCTATAAAATTGAGCCATGGGACCTTCAAGAATTATGCAAAATAGGAACGGATGAACAAAGTGACTGGTATTTCTTTAGTCATAAAGATAAGAAGTACCCAACTGGAACACGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGATAAAGCAATTTACTCTAAGCATTGCCTGGTTGGGATGAGAAAGACTCTAGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGGCTAGAAACTAATGAAAATGGAACTCCTCAGGAAGAAGGGTGGGTTGTATGCAGAGTGTTCAAGAAGCGATTGACAACAATGCAGAAAGTGGGAGAACCTTGTTGGTATGAAGACCAAGTTTCCTTCATGCAAGATCTTGAATCCCCGAGGCGGATTTCTCACCCTTATGTATCATACAACCATCACCACCCTTGCAAACCGGAGCTGGAATTGCAATACAATATACCCCATGATGCTTTTCTCAATCTTCCGCAACTAGAAAGCCCCAAAATTTCTCAATCAGCAATCAGTTTGAGTTGCAGCTCAGTTGTCCCTTATGGTTATGATAGCAATAACAATGGAAGCACTTTGCAGTTCTCATCACTTACTCAAGAAGAACAGGTACAACATTGCCAACAACAAAATCTGAACTCGCTTTATGGTAGCAATGATCAAGCGGTGGACCAAGTGACAGATTGGCGAGTACTTGACAAATTTGTTGCTTCTCAGCTCAGTCACGACCAAGATGTTTCGAAGGAAACTAGTTTTTCCAATGCACCTGTCCTACATGTTGCTGAACAAATCACTATGCTTGCAAACGGATCCAAAAGGGCACAAATTTCCCAGGAATATGCTTCAACATCCACCTCCAGTTCCCAGATTGACATGTGGAAGTGA 1059 0.4193 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPQEEGWVVCRVFKKRLTTMQKVGEPCWYEDQVSFMQDLESPRRISHPYVSYNHHHPCKPELELQYNIPHDAFLNLPQLESPKISQSAISLSCSSVVPYGYDSNNNGSTLQFSSLTQEEQVQHCQQQNLNSLYGSNDQAVDQVTDWRVLDKFVASQLSHDQDVSKETSFSNAPVLHVAEQITMLANGSKRAQISQEYASTSTSSSQIDMWK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4724g00017 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 269 - -
Gabi4724g00017 352 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Gabi4724g00017 352 MobiDBLite consensus disorder prediction 333 352 - -
Gabi4724g00017 352 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Gabi4724g00017 352 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Gabi4724g00017 352 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Gabi4724g00017 352 FunFam NAC domain-containing protein 16 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4724g00017 Gabi-Chr4724 269994 273203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4724g00017 1 352 NAC Transcription Factor Family AT1G12260 58.356 3.34e-139 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4724g00017 NAM 1.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4724g00017 - - gmx:100783529 591.267