Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4724g00015 ATGTCATCATCCTCTTCCACTACATTATCACTGGACCACCTCCCTCCTTCCGAGCAGCTTTGTTATGTTCACTGCACTATTTGTGACACCGTCCTCGCTGTAAGTGTTCCCTGCACAAGCTTGTTCAAGACTGTCACTGTCCGATGCGGCCATTGCAGTAACCTCTTGCCAGTGAACATGCGTGCGTTGCTTCTGCCATCGCCCAATCAATTTCATTTGGGTCACTCTTTCTTCTCCCCACCTCATAACCTTCTGGAGGAGATGCCAAACTCGTCTCCAAATTTTCTTATCAACCGACCAAATGCATCAAATGACTTCTCTATGCCAGCTAGGTCTGCAGTTGATGAGCTTCCACGGCCACCGATCATAAATAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCTGCGTACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCTGCTGCCAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGAGTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGTGAGGAGGTTCTCATGAAAGATGGGTTTTATGCTCCGGCCAATGTTGGTGTTTCACCCTACTAA 645 0.4899 MSSSSSTTLSLDHLPPSEQLCYVHCTICDTVLAVSVPCTSLFKTVTVRCGHCSNLLPVNMRALLLPSPNQFHLGHSFFSPPHNLLEEMPNSSPNFLINRPNASNDFSMPARSAVDELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQSVKKTNVCQQEGEEVLMKDGFYAPANVGVSPY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4724g00015 214 SUPERFAMILY HMG-box 122 171 IPR036910 -
Gabi4724g00015 214 CDD HMG-box_SF 132 168 - -
Gabi4724g00015 214 Gene3D High mobility group box domain 123 186 IPR036910 -
Gabi4724g00015 214 PANTHER PROTEIN YABBY 6-RELATED 1 188 IPR006780 GO:0007275
Gabi4724g00015 214 Pfam YABBY protein 16 178 IPR006780 GO:0007275
Gabi4724g00015 214 FunFam Axial regulator YABBY 123 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4724g00015 Gabi-Chr4724 227163 230555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4724g00015 27 212 C2C2-YABBY Transcription Factor Family AT4G00180 60.766 3.33e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gabi4724g00015 YABBY 4.9e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4724g00015 K25796 - gmx:100798441 396.741