Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4719g00062 ATGGAGGATTCTTCAGCATGTGAAGACACCAAGAGTTGTCCTAGAGGTCACTGGAGACCCGCTGAGGATGAAAAGCTCCGGCAACTTGTTGAACAATATGGTGCTCAGAATTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGTCGGCTAAGGTGGTTCAACCAACTTGACCCCAGAATTAACAGAAGACCATTCTCGGAAGAGGAAGAAGAGAAGCTACTTGCAGCTCATCGCATTCATGGGAACAAGTGGGCCCTCATAGCGAGGCTTTTCCCTGGTCGAACAGATAATGCAGTGAAAAATCACTGGCATGTTATAATGGCAAGGAAACAAAGAGAACAATCAAAGCTAAGTGGGAAGAGAAGCTTTCCAGATATTTATAATGACCATTCCAACAGTTCCTCGTACATTAACTTCCCCGAAAAGAGACCACAACCTCAAGACTCAGTATTTAGGACGAGAATTGGGTTAGAGAATACGAGATTCTTTGACTTCCGGAACCTGAATAAAGTTGCTGATACTCCTTCTAGTTCTTTGGCCTCTTGGAATTTTGCATCAGTGCCAACCACCACAAACAGTTCTTCTGTAGCAGATTCAGTTAGAAAAGGAGGGAGAGAATATGTTAATAGTCCTTATAGAATTTATCCAAATCCAACAACATCCCTAGGAAGCTTTCGCGGTTCCACTACCCCATTCTCTCTTCCAAACTACAAGAGGGTTGTTCCTAGTCCTTTTGGATTCGTCGGTTCTTCTGAAGATGCAAGGATGAAGAGGGACTTGATGAGTTTCTGTGATAACTCATCCACATTAAAGAATTTGAGGGCTTCTATGGAGAAAGAGAAAGCAGATAATGAGTCCAATGTTGAGCACAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCTCTTCATCATAA 936 0.4263 MEDSSACEDTKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFSEEEEEKLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLSGKRSFPDIYNDHSNSSSYINFPEKRPQPQDSVFRTRIGLENTRFFDFRNLNKVADTPSSSLASWNFASVPTTTNSSSVADSVRKGGREYVNSPYRIYPNPTTSLGSFRGSTTPFSLPNYKRVVPSPFGFVGSSEDARMKRDLMSFCDNSSTLKNLRASMEKEKADNESNVEHKEVPFIDFLGVGVSSS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4719g00062 311 CDD SANT 18 59 IPR001005 -
Gabi4719g00062 311 Gene3D - 69 128 - -
Gabi4719g00062 311 PANTHER MYB PROTEIN-RELATED 15 156 - -
Gabi4719g00062 311 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Gabi4719g00062 311 Gene3D - 15 66 - -
Gabi4719g00062 311 CDD SANT 77 109 IPR001005 -
Gabi4719g00062 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi4719g00062 311 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Gabi4719g00062 311 SMART sant 14 63 IPR001005 -
Gabi4719g00062 311 SMART sant 66 114 IPR001005 -
Gabi4719g00062 311 FunFam MYB transcription factor 15 66 - -
Gabi4719g00062 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi4719g00062 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 61 IPR017930 -
Gabi4719g00062 311 Pfam Myb-like DNA-binding domain 18 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4719g00062 Gabi-Chr4719 847047 848628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4719g00062 13 222 MYB Transcription Factor Family AT1G17950 49.565 3.71e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4719g00062 Myb_DNA-bind_6 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4719g00062 K09422 - gmx:100817328 410.994