Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4719g00028 ATGTTCCCACAAAGACATAGCTTTAGTGGCGGTAGCGGGCTAGAACACATGTTGCAGCTCCCATCTTCTTCTCCTATGCAATTTCCAACCCCAATGGAACGATCAAGTTCAAGGTGGAAACCCAGCATTGAGATAGCTCCCAATTGCCCTCGTTGCGCTTCCACAAACACAAAATTCTGTTACTACAACAACTACAGCTTGTCACAGCCAAGATATTTCTGCAAAGGTTGCAGGCGCTACTGGACCAAAGGTGGCTCTATCCGGAACGTGCCGGTTGGCGGTGGCTGCCGCAAAAACCGCCGCGGAAAGCCGGCGAGGCACACGCAAAGCGAACGCCTTTCCATCCATGGGAATTCTGGTTCTGAGAATAGAGAGTCATCATCATCAATAGGTGATGGTGATGAACCCAACCAAACCAACGGGTCACGTGATATAGACATGGCCCTTGTGTTTGCCAAATTCTTGAACCAAAACCCAAGCTCTGGTACTGAGGAATTTGAGAGTGAGACTAATAATGGATCATCTTCTTCAAACAATTTGTCAGCTTCTTTGACTACTCCGGAAAGCGTTGAAACTGAGAATGATGCAGTAATCCAGCCTCAGAATCAGAATCCTTATGATGAAACAATTGAGAATTTTGGAGGGGAGGAATTGAGTTTAAGTGGGATTGATGAATTGGAAGGGTTTCTGGGTGTGGGTGGTGCTGATGAAGATGTGGTTCAAGATGTTCTCTGGTCTGATGCTGCTGCTGCTACGGCTACCATGTCATCTTGGCAACCATCCATGATGCAAATGCAGTTACAAGAGTTGGAGTATTCGATGCCATTGAATGATGATGATGATGGTCAATTGTTACCCATTAATTCTACCATGAATTTAATTAGCGACAGTTGGAGTACTTGGAGTTCCTTTGATCTTTCAACGATGGAACTCTTCTCATCAAAACCTTAA 951 0.4532 MFPQRHSFSGGSGLEHMLQLPSSSPMQFPTPMERSSSRWKPSIEIAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSIRNVPVGGGCRKNRRGKPARHTQSERLSIHGNSGSENRESSSSIGDGDEPNQTNGSRDIDMALVFAKFLNQNPSSGTEEFESETNNGSSSSNNLSASLTTPESVETENDAVIQPQNQNPYDETIENFGGEELSLSGIDELEGFLGVGGADEDVVQDVLWSDAAAATATMSSWQPSMMQMQLQELEYSMPLNDDDDGQLLPINSTMNLISDSWSTWSSFDLSTMELFSSKP 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4719g00028 316 MobiDBLite consensus disorder prediction 111 142 - -
Gabi4719g00028 316 MobiDBLite consensus disorder prediction 91 142 - -
Gabi4719g00028 316 Pfam Dof domain, zinc finger 47 101 IPR003851 GO:0003677|GO:0006355
Gabi4719g00028 316 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Gabi4719g00028 316 MobiDBLite consensus disorder prediction 1 39 - -
Gabi4719g00028 316 MobiDBLite consensus disorder prediction 159 205 - -
Gabi4719g00028 316 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Gabi4719g00028 316 MobiDBLite consensus disorder prediction 16 37 - -
Gabi4719g00028 316 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 199 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4719g00028 Gabi-Chr4719 359731 360723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4719g00028 27 244 C2C2-Dof Transcription Factor Family AT1G21340 41.150 3.00e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi4719g00028 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4719g00028 - - mtr:11416134 328.561