Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4719g00017 ATGGACAAGAAGCTTGCCCTCTTGTTCATTTTTTCAGCAGTGTTCGTTAGTATTATTGGAGCTGAACCAGTGGAAGATAAACAAGCTTTGCTTGATTTCCTTCACAACATGGATCACTCTCCTCATTTCAACTGGGATGAAAACTCTTCTGTTTGCAAAAGCTGGAGAGGGGTGACTTGTAACACAGAACAATCCCGAGTTATAGCTCTCAGATTGCCTGGAACAAGGTTGAGAGGTCCAATCCCACACAACACACTTAGTCGCCTATCAGCACTTCAGATTGTGAGTCTTAGATCAAATGGTATAACGGGTCCTTTCCCATCTGGTTTCTCTGAGCTAAAAAATTTAACCGGCCTCTATCTCCAATTTAACAAGTTTTCTGGCCCATTGCCATTGGATTTTTCAGTTTGGAATAATCTTACTGTTGTCAATTTGTCCAACAATTCTTTTAATGGGAGCATCCCTTTTTCAATTTCAAATTTGACTCATCTCACTTCATTAGTCCTTGCAAACAACTCACTTTCGGGTGAGATTCCTGATCTCAATATATATAGCCTTCAAGAGCTAAATTTGGCCAACAATAACCTTAGTGGGGTTGTGCCTAAGTCCCTTCTTAGATTTCCCAGTTCGGTCTTTGCTGGTAACAATCTTACATCTGCAAACGCACTTCCTCCAGCTTTTCCCGTGCAACCACCGAGTGCTCCTCCTTCAAAGAAAACCAAAGGAATTAGTGAAATTGCATTGTTGGGTGTCGTTATTGGTGTTTGTGCGCTGGGATTTGCGTTGGTAGCACTTTTCATGATTGTCTGCTGCTATATTAATGAAGATGTAGACGAGCAACCAGTGAAATCCCAGAAAAAAGAAGTCCCTCTGAAAGAAGAATCTTCTGAAAAAGGTGATAAAAACAAAGTAGTCTTCTTTGAGGATTGCAATCTTGCATTTGATATGGAGGACCTGTTGAGAGCGTCTGCTGAGATTCTTGGAAAGGGTACCTTTGGTGCAACATATAAGGCTGCTCTAGAGGATGCAACCACTGTGGTGGTGAAGAGGTTGAAGGATGTCACAGTTGGAAAACGAGACTTTGAACAGCAGATGGAAGTGGTGGGGAAAATTAAGCACGACAATGTGACTGCATTAAGGGCATATTATTATTCCAAGGAGGAGAAACTTATAGTATATGACTACTATCAACAAGGCAGTGTTTCTGCAATGTTACATGGCAAAGGAGTGGAAGGCAGAAAGAGGTCTTTAGACTGGGATAGCCGTTTGAGAATTGCAATTGGTGCAGCGAGAGGCATTACTCACATCCATTCTCAACAAGGAGGGAAACTGGTTCATGGAAACATAAAAGCCTCAAACATCTTCCTCAACTCAGAAGGGTATGGTTGTATGTCTGATATGGGGTTGGCAACATTAATGAGTCCAATTCCCCCACCAGCAATGAGGGCTGCAGGATACCGTGCCCCAGAAGTAACAGACACTCGTAAAGCAACCCAAGCATCTGATGTCTACAGTTTTGGGGTTCTTCTACTTGAGCTTCTAACTGGGAAATCCCCCATAAATGCCACAGAAAGTGAGCAGGTTTTCCACTTGGTTAGATGGGTGAATTCTGTGGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATGTAGAGCTGTTGAGGTATCCAAATATAGAGGAAGCAATGGTAGAGATGCTACAAATAGGGATGGCCTGTGCAGCAGAAGTACCAGATCAGAGACCAAAAATGCAGGACGTGGTGAGAATGACGGAGGATATTCGTCGTGTAAATTCAGGAAATCGACCATCCTCTGGATCCAGATCAGAAGTTTCTACCCCAACTCCTCTTGCAATTGACATACCTTCTACCTCTGTTCCACAGTGA 1884 0.4294 MDKKLALLFIFSAVFVSIIGAEPVEDKQALLDFLHNMDHSPHFNWDENSSVCKSWRGVTCNTEQSRVIALRLPGTRLRGPIPHNTLSRLSALQIVSLRSNGITGPFPSGFSELKNLTGLYLQFNKFSGPLPLDFSVWNNLTVVNLSNNSFNGSIPFSISNLTHLTSLVLANNSLSGEIPDLNIYSLQELNLANNNLSGVVPKSLLRFPSSVFAGNNLTSANALPPAFPVQPPSAPPSKKTKGISEIALLGVVIGVCALGFALVALFMIVCCYINEDVDEQPVKSQKKEVPLKEESSEKGDKNKVVFFEDCNLAFDMEDLLRASAEILGKGTFGATYKAALEDATTVVVKRLKDVTVGKRDFEQQMEVVGKIKHDNVTALRAYYYSKEEKLIVYDYYQQGSVSAMLHGKGVEGRKRSLDWDSRLRIAIGAARGITHIHSQQGGKLVHGNIKASNIFLNSEGYGCMSDMGLATLMSPIPPPAMRAAGYRAPEVTDTRKATQASDVYSFGVLLLELLTGKSPINATESEQVFHLVRWVNSVVREEWTAEVFDVELLRYPNIEEAMVEMLQIGMACAAEVPDQRPKMQDVVRMTEDIRRVNSGNRPSSGSRSEVSTPTPLAIDIPSTSVPQ 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4719g00017 627 Gene3D Ribonuclease Inhibitor 24 228 IPR032675 -
Gabi4719g00017 627 MobiDBLite consensus disorder prediction 596 627 - -
Gabi4719g00017 627 MobiDBLite consensus disorder prediction 590 627 - -
Gabi4719g00017 627 ProSiteProfiles Leucine-rich repeat profile. 185 206 IPR001611 GO:0005515
Gabi4719g00017 627 PANTHER OS05G0588300 PROTEIN 8 604 - -
Gabi4719g00017 627 Gene3D Phosphorylase Kinase; domain 1 287 395 - -
Gabi4719g00017 627 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 396 604 - -
Gabi4719g00017 627 Gene3D Transferase(Phosphotransferase) domain 1 397 608 - -
Gabi4719g00017 627 ProSitePatterns Protein kinases ATP-binding region signature. 327 358 IPR017441 GO:0005524
Gabi4719g00017 627 SUPERFAMILY L domain-like 39 207 - -
Gabi4719g00017 627 Pfam Protein tyrosine and serine/threonine kinase 325 588 IPR001245 GO:0004672|GO:0006468
Gabi4719g00017 627 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Gabi4719g00017 627 FunFam Probable inactive receptor kinase RLK902 23 182 - -
Gabi4719g00017 627 FunFam pollen receptor-like kinase 1 291 395 - -
Gabi4719g00017 627 ProSiteProfiles Protein kinase domain profile. 321 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4719g00017 627 SUPERFAMILY Protein kinase-like (PK-like) 325 590 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4719g00017 Gabi-Chr4719 228886 231223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4719g00017 21 616 Receptor kinase-like Gene Family AT4G23740 56.410 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi4719g00017 PK_Tyr_Ser-Thr 1.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4719g00017 - - gmx:100813065 985.326