Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4719g00006 ATGGATGACAGCTTATCCGATATTTTCGATGACAAAGAATTTGCGAACAACCACTTCGGTGCAGATGATCTCTTTTCCATTTTGGAGAGCCTAGAAGACTTCACAGATTTTCCTCTCGTTAATGAAGAAGCTGTTATTATTACAGCTTCGAAAGAGAAAGAGAACGAGGACGACACCTCAAGACTGGTGTCACAAAAGTCAACCTCTTCAAGTGCTCCACATGATTCCGAAATTGAGCTTGAAACCTCACCTAAAAGCAAGAGACAAAAGCTTGCCCCCACTTCCCCGGAGGAGCCAAACCCAGATGGACAACAAAGGATGTCTCACATTACCGTTGAACGCAACCGAAGAAAACAAATGAATGAGCACTTGTCCGTCTTGAGATCACTTATGCCTTCCTTCTATGTCAAAAGAGGAGATCAAGCATCGATAATTGGAGGAGTGGTTGATTACATCAACGAGTTGCAGCAGGTGCTCCAAGCCCTGGAGGCAAAGAAACAAAGAAAAGTTTACAGTGAAGTACTAAGCCCTAGGCTAGTTTCAAGTCCAAGGCCATCACCACTTAGTCCTCGAAAACCACCTCTGAGTCCTAGACTAAACTTGCCTATTAGTCCAAGGACACCACAACCAGGTAGCCCTTACAAGCCGAGGTTGCATCAAGGATACATTTCACCCACCATATCCAACTCTCTCGAGCCATCTCCTACTTCTTCTGCTTCCTCCATCATCGATAGTATCAATGAGCTTGTTGCCAATTCCAAGTCTGCTATTGCCGATGTTGAGGTCAAGTTTTCGGGTCCACATGTTCTTTTGAAAACTTTATCTCAACGAATTCCAGGGCAAGCTCTGAAGATCATGTCAGCACTTGAAGAACTTGCGCTTGAAATCCTTCATGTGAACATTAGCAGTACTTCCGATGACACCATGTTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACTAATCCAGCAAACATTCTGCTAA 1014 0.4398 MDDSLSDIFDDKEFANNHFGADDLFSILESLEDFTDFPLVNEEAVIITASKEKENEDDTSRLVSQKSTSSSAPHDSEIELETSPKSKRQKLAPTSPEEPNPDGQQRMSHITVERNRRKQMNEHLSVLRSLMPSFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYKPRLHQGYISPTISNSLEPSPTSSASSIIDSINELVANSKSAIADVEVKFSGPHVLLKTLSQRIPGQALKIMSALEELALEILHVNISSTSDDTMLNSFTIKIGIECQLSAEELAQLIQQTFC 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4719g00006 337 MobiDBLite consensus disorder prediction 49 107 - -
Gabi4719g00006 337 PANTHER TRANSCRIPTION FACTOR FAMA 4 336 IPR044283 GO:0003700|GO:0010052
Gabi4719g00006 337 MobiDBLite consensus disorder prediction 183 212 - -
Gabi4719g00006 337 CDD bHLH_AtFAMA_like 107 178 - -
Gabi4719g00006 337 Coils Coil 148 168 - -
Gabi4719g00006 337 FunFam Transcription factor SPEECHLESS 96 170 - -
Gabi4719g00006 337 Pfam Helix-loop-helix DNA-binding domain 105 156 IPR011598 GO:0046983
Gabi4719g00006 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 178 IPR036638 GO:0046983
Gabi4719g00006 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 155 IPR011598 GO:0046983
Gabi4719g00006 337 Gene3D - 97 169 IPR036638 GO:0046983
Gabi4719g00006 337 SMART finulus 110 161 IPR011598 GO:0046983
Gabi4719g00006 337 MobiDBLite consensus disorder prediction 62 77 - -
Gabi4719g00006 337 MobiDBLite consensus disorder prediction 177 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4719g00006 Gabi-Chr4719 92293 94882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4719g00006 1 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.852 1.06e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4719g00006 HLH 3.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4719g00006 K20558 - gmx:100777437 479.944