Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4718g00001 ATGCATTCTGAACAACAACAACAAGAAGAAGAAGAAGAGCAAGGTTCACCGTTGTCTCCATCGGACACATACCTGGTAGGCTTCATCAATGCCAGCATCGTGGGTATCAAGCACTACTCCGCCACCATCACCGGCCGCGAAATGGTGGGTCTTGTCCGCGAACCCTTCAACGACCACGACGAAAACGCCATCAAGGTCATCAACACCCGAACCGATCAGGTCGGTTACATTGACCGTTCCACCGCCGCCGTTTTGTCTCCCCTCATCGACACCAACCTCGTCATCGTCGAAGGCATCATCCCCAAATCGCGCTCCGCCGCCAACAAGTTCCGAATCCCTTGCCAAGTTCACGTCTTTGCTTATTCCCGCGACTTCCCAACCGTTAAATCCGCAATCTTGCGAGGTGGGTTGCACTTGATTACCGAATACGAAGCGTCGTTCACTCTCTCGGAGTCCGTGGCCGTTAAAGAAACCAGAGCCGGGAAAAGAATCAAGACCGAGGACGCGATTTTCAATCTTGTTGATGAGAATCTCGCTAGCAATAAGCGCGTTTTGCAAGCGCTGGAGCCTCCGAGGAGCGTGATTACCACGGAGCTTCTTGAACATCAGAAGGAAGGTCTTGGGTGGTTGGTTCACAGAGAGAATTCCGATGAGTTGCCACCGTTTTGGGAAGAGAGTGATGGTAAGTTCGTGAATGTGTTGACCAATTATCAAACCGATTCAAGGCCTGAGCCCCTGCGTGGTGGAATCTTTAATGATGCTATGGGTTTGGGAAAGACTTTAACTTTGCTTTCTTTGATTGCTTTTGATAAAAGAGATGAAATGGGGCATAAACAGCGTGAAGGGTTGTTGGTGATGTCTAAGAAGAAGAAAAGGGCAAATGAAATTGCCACTGGTTCACGAAAAAGAATGTTCTTTGGTGACAGTGAGACATCTTCTACTGACATGGGAAGAAAGACAACATTGGTCGTGTGCCCTCCTTCTGTAATGTCAACTTGGTCAACGCAAATATTGGAACACACTGAGAAACGGTCATTGAAGACATACATATATTATGGGGATAAAAGGACCAAGAGTCCTGAGGAGCTTTTGATGTATGATATTGTCTTGACCACATACCCTACTTTAGCTAGTGAAGAAAGAGAGTTAGAGACTGCGGTGAAGCAAGTAGATTGGTGGAGAATCATCTTGGATGAAGCACACACAATTAAGAACACCAATGCTGGACAAACTCGTGCAGTTATTGAACTCAATGCCAAGCGGAAGTGGGCTGTCACAGGGACACCGATTCAGAATGGTTCATATGATTTGTTTTCTCTTATGGGATTTTTACGCTTCCAACCCTTTTCAGATAGGGTCTATTGGCGAACCTTGGTGCAGCGTCCACTTAACACGGCCAAGAAGAGAGGGCTCACACGTTTGCAGGTTTTAATGGCAGCAATTTCATTACGAAGAACAAAAGAGAAGGGATTGGTAGGGCTGCCACCGAAAGCCATAGAGACTTGTTATGTTGAACTTTCTCGGGAAGAACGTGAAATGTATGATGAGGTGAAAGAGGAATCAAAGTTAAGAATGATCGATTATTGCCATAATGATTGTCTAGTGAACCATTATTCCACTGTACTGAGTATGATCCTACGACTTCGCCAAATATGTACTCATTTGGCATTGTGCCCTTCAGATCTCAAATCAGTATTCTCTTCATATCGTACAGAAGATGTTACGAATAACCCTGAGTTGCTGAAGAAGTTAGTTGGGGTGCTGCAAGATGGTGATTTTGACTGTCCAATTTGTATGTCTCCTCCATCGGATATAGTAATAACATGCTGTGCTCACATTTTCTGCCGAGACTGTATTCTGAGAACTCTAAAGACAAGTGATTCTTGTCCTCTTTGTCGGCGCACACTCTCGGAACCTGACTTGTTCTCTGCCCCTTCTGAATCTTCTGAGGTTGATAATAGTAGTGAATCATGCTCATCACAGAAAAGGTTATCTTCCAAAGCCTCTGCTCTAATAAAACTTCTGACAGAAACGAGGGATCAACATCCAGCTGCAAAATCAGTTGTATTTTCGCAATTTCGCAAGATGCTATTGTTCCTAGAAGTGCCTCTGAAAGCAGCTGGTTTCAAAATTCTGCGTCTTGATGGGACAATGAATGCTACACATAGGGCTAGTGTTATTGAGAAATTTCAAGCCTCTGGAAGGGATGAGCCAATGGTTCTGCTTGCAAGCCTTAGGGCCTCATCTACAGGTATAAATCTTACAGCTGCCTCTAGAGTGTACTTTATGGAGCCATGGTGGAACGCTGCAGTTGAGGAACAAGCGACGGATCGTGTCCACCGCATTGGACAGAAAGAGCCTGTGAAGATTGTTAGGTTGATTGCTCAAAACAGCATTGAAGAGAAAATATTAATGTTGCAGGAGAAGAAGAAAGACCTAGAAAGGGAAACATCTAGGAGGGGATCAAAGGATGATGGCATGGGCATGGGCATGGGCATAGGCATGGATGATCTACGTTTCCTTTTGGAGGATTAG 2535 0.4529 MHSEQQQQEEEEEQGSPLSPSDTYLVGFINASIVGIKHYSATITGREMVGLVREPFNDHDENAIKVINTRTDQVGYIDRSTAAVLSPLIDTNLVIVEGIIPKSRSAANKFRIPCQVHVFAYSRDFPTVKSAILRGGLHLITEYEASFTLSESVAVKETRAGKRIKTEDAIFNLVDENLASNKRVLQALEPPRSVITTELLEHQKEGLGWLVHRENSDELPPFWEESDGKFVNVLTNYQTDSRPEPLRGGIFNDAMGLGKTLTLLSLIAFDKRDEMGHKQREGLLVMSKKKKRANEIATGSRKRMFFGDSETSSTDMGRKTTLVVCPPSVMSTWSTQILEHTEKRSLKTYIYYGDKRTKSPEELLMYDIVLTTYPTLASEERELETAVKQVDWWRIILDEAHTIKNTNAGQTRAVIELNAKRKWAVTGTPIQNGSYDLFSLMGFLRFQPFSDRVYWRTLVQRPLNTAKKRGLTRLQVLMAAISLRRTKEKGLVGLPPKAIETCYVELSREEREMYDEVKEESKLRMIDYCHNDCLVNHYSTVLSMILRLRQICTHLALCPSDLKSVFSSYRTEDVTNNPELLKKLVGVLQDGDFDCPICMSPPSDIVITCCAHIFCRDCILRTLKTSDSCPLCRRTLSEPDLFSAPSESSEVDNSSESCSSQKRLSSKASALIKLLTETRDQHPAAKSVVFSQFRKMLLFLEVPLKAAGFKILRLDGTMNATHRASVIEKFQASGRDEPMVLLASLRASSTGINLTAASRVYFMEPWWNAAVEEQATDRVHRIGQKEPVKIVRLIAQNSIEEKILMLQEKKKDLERETSRRGSKDDGMGMGMGIGMDDLRFLLED 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4718g00001 844 Pfam SNF2-related domain 202 556 IPR000330 GO:0005524|GO:0140658
Gabi4718g00001 844 Gene3D - 649 827 IPR027417 -
Gabi4718g00001 844 Gene3D - 169 506 IPR038718 -
Gabi4718g00001 844 SMART ring_2 595 632 IPR001841 -
Gabi4718g00001 844 Gene3D - 19 139 - -
Gabi4718g00001 844 MobiDBLite consensus disorder prediction 1 20 - -
Gabi4718g00001 844 CDD SF2_C_SNF 664 794 - -
Gabi4718g00001 844 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 162 823 - -
Gabi4718g00001 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 824 IPR027417 -
Gabi4718g00001 844 SMART HIRAN_2 26 122 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gabi4718g00001 844 SMART ultradead3 195 459 IPR014001 -
Gabi4718g00001 844 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 670 828 IPR001650 -
Gabi4718g00001 844 Pfam Zinc finger, C3HC4 type (RING finger) 593 636 - -
Gabi4718g00001 844 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 240 447 IPR014001 -
Gabi4718g00001 844 Coils Coil 796 816 - -
Gabi4718g00001 844 SUPERFAMILY RING/U-box 583 639 - -
Gabi4718g00001 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 573 648 IPR013083 -
Gabi4718g00001 844 Pfam HIRAN domain 27 118 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gabi4718g00001 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 483 IPR027417 -
Gabi4718g00001 844 SMART helicmild6 698 783 IPR001650 -
Gabi4718g00001 844 ProSitePatterns Zinc finger RING-type signature. 610 619 IPR017907 -
Gabi4718g00001 844 Pfam Helicase conserved C-terminal domain 667 783 IPR001650 -
Gabi4718g00001 844 ProSiteProfiles Zinc finger RING-type profile. 595 633 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4718g00001 Gabi-Chr4718 13448 17304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4718g00001 11 825 RAD5 or RAD16-like Gene Family AT5G05130 57.263 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4718g00001 SNF2_N 6e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4718g00001 K15711 - csin:114305708 1004.2