Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4717g00003 ATGGAGGCCCTTGGTTCCGTGGATGATCTCTTGGATTTCTCATCAGACATAGGTGACGAAGATGACGACGATGACAAAGCTAGGAAAACCTTTCCTTCACTTAATCCAAAATGCAATAATCCATCATTGTTTAACCCATTGGACCTGGATGATCCTAGCCATTCATTTTCTGAGTTTGCAGAAGAAGAGCTTGAATGGCTATCCAACAAGGATGCATTTCCTGCTGTTGAAACATTTGTTGACATACCCACTATTCAACCTGACATGTCAAAGCACCAAAGAAGGGCAGCCCCAGTGATTGAGTACAGCACAAGCAGTACCAACAGTAATAGCAGTCCCAACAGCATTACCCTCTTAAATGGATATGATCACCTGAAGGTCCCTGTCCGTGCACGGAGCAAGGGTCGTAGTAGGCCACGCCCTGGCATTGCTGACATCTCTAGCCAGCAATTCTGGTTGAGACAACCAAGTAATGAAATTTCCAAAGTAGAAGAAGTGATAAAAATCTCAACCATTGGGAGGAAATGTCAGCATTGTGGAGCTGAAAAGACTCCACAATGGCGGGCAGGTCCCCTTGGGCCAAAAACCCTGTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGGCGGCTTGTGCCTGAATACCGTCCCGCAAGTAGCCCAACATTTCATAGTGAAATGCATTCTAATTCCCACAGGAAGATAATGGAGATGAGGAGGCAAAAGCAAATGGGATGGTTTGAAGGCCATGAATAA 753 0.4555 MEALGSVDDLLDFSSDIGDEDDDDDKARKTFPSLNPKCNNPSLFNPLDLDDPSHSFSEFAEEELEWLSNKDAFPAVETFVDIPTIQPDMSKHQRRAAPVIEYSTSSTNSNSSPNSITLLNGYDHLKVPVRARSKGRSRPRPGIADISSQQFWLRQPSNEISKVEEVIKISTIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFHSEMHSNSHRKIMEMRRQKQMGWFEGHE 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4717g00003 250 SMART GATA_3 170 220 IPR000679 GO:0006355|GO:0043565
Gabi4717g00003 250 Pfam GATA zinc finger 176 209 IPR000679 GO:0006355|GO:0043565
Gabi4717g00003 250 ProSiteProfiles GATA-type zinc finger domain profile. 170 206 IPR000679 GO:0006355|GO:0043565
Gabi4717g00003 250 PANTHER GATA TRANSCRIPTION FACTOR 7 242 - -
Gabi4717g00003 250 FunFam GATA transcription factor 166 249 - -
Gabi4717g00003 250 MobiDBLite consensus disorder prediction 1 46 - -
Gabi4717g00003 250 CDD ZnF_GATA 175 222 IPR000679 GO:0006355|GO:0043565
Gabi4717g00003 250 Gene3D - 171 243 IPR013088 GO:0006355|GO:0008270
Gabi4717g00003 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 233 - -
Gabi4717g00003 250 ProSitePatterns GATA-type zinc finger domain. 176 201 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4717g00003 Gabi-Chr4717 76687 86780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4717g00003 1 244 C2C2-Gata Transcription Factor Family AT3G24050 40.860 2.60e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi4717g00003 GATA 8.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4717g00003 - - gmx:100784527 360.918