LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4715g00001	ATGGAAAAGAAAAGGGTGGCGGTTCCTCTTGTTTGCCATGGTCACTCTCGCCCAGTGGTTGATCTCTTTTACAGTCCTGTTACTCCCGATGGATTCTTCCTTATCAGCGCAAGCAAGGATTCGAGTCCTATGCTCAGGAATGGAGAGACTGGAGATTGGATCGGAACCTTTGAAGGGCACAAAGGTGCAGTATGGAGTTGCTGCTTGGATACTAATGCTTTGCGTGCTGCAACTGCTTCTGCTGATTTCTCAACGAAATTTTGGGATGCGTTAACAGGCGATGAATTACACTCTTTTGAACATAAGCACATTGTTCGAGCATGTGCTTTTTCTGAGGATACACACCTTTTGCTCACTGGGGGAGCAGAGAAAATTCTCCGAATTTATGATTTGAATCGGCCAGATGCACCACCCAGAGAAGTGGATAAATCCCCCGGTTCAGTTAGGACTGTTGCATGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGGTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACACTTGACACCAAGTCATCTATGACTAGTGCTGAAGTGAGTCAGGATGGTCGTTATATCACAACTGCTGATGGTTCTACAGTAAAGTTTTGGGATGCAAATTACTATGGATTGGTAAAGAGCTATGATATGCCCTGCACTGTGGAATCAGCTTCGCTGGAGCCCAAGTATGGGAACAAGTTCATTGCTGGGGGAGAAGACATGTGGGTTCATGTTTTTGATTTCCATACTGGGGATGAGATTGCATGCAACAAGGGCCACCATGGTCCTGTACACTGTGTCCGTTTCTCTCCAGGAGGAGAATCATATGCCTCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACATTGACTCATGACGAATTGGAAGCTCTATCCTCAAATGGATCAATTGAAAAGGTAGGGGTAACTGTGGAGGAAGTTTCACGCAAGATTGAGGGTTTTCATATCGCAGAGGATGCGTGGTCGAAAGAAAAGGAAGAGGCAGGGGAGGAATTATGA	1050	0.4552	MEKKRVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSTKFWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGAEKILRIYDLNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLDTKSSMTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESASLEPKYGNKFIAGGEDMWVHVFDFHTGDEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTLTHDELEALSSNGSIEKVGVTVEEVSRKIEGFHIAEDAWSKEKEEAGEEL	349

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4715g00001	349	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	266	298	-	-
	Gabi4715g00001	349	ProSiteProfiles	Trp-Asp (WD) repeats profile.	98	132	IPR001680	GO:0005515
	Gabi4715g00001	349	SMART	WD40_4	50	89	IPR001680	GO:0005515
	Gabi4715g00001	349	SMART	WD40_4	134	174	IPR001680	GO:0005515
	Gabi4715g00001	349	SMART	WD40_4	217	256	IPR001680	GO:0005515
	Gabi4715g00001	349	SMART	WD40_4	92	130	IPR001680	GO:0005515
	Gabi4715g00001	349	SMART	WD40_4	5	47	IPR001680	GO:0005515
	Gabi4715g00001	349	SMART	WD40_4	259	298	IPR001680	GO:0005515
	Gabi4715g00001	349	SMART	WD40_4	177	214	IPR001680	GO:0005515
	Gabi4715g00001	349	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I	7	336	-	-
	Gabi4715g00001	349	FunFam	Serine-threonine kinase receptor-associated protein	8	322	-	-
	Gabi4715g00001	349	ProSiteProfiles	Trp-Asp (WD) repeats profile.	266	307	IPR001680	GO:0005515
	Gabi4715g00001	349	Pfam	WD domain, G-beta repeat	94	130	IPR001680	GO:0005515
	Gabi4715g00001	349	Pfam	WD domain, G-beta repeat	266	297	IPR001680	GO:0005515
	Gabi4715g00001	349	Pfam	WD domain, G-beta repeat	54	89	IPR001680	GO:0005515
	Gabi4715g00001	349	Gene3D	-	9	323	IPR015943	GO:0005515
	Gabi4715g00001	349	CDD	WD40	14	298	-	-
	Gabi4715g00001	349	ProSiteProfiles	Trp-Asp (WD) repeats profile.	57	98	IPR001680	GO:0005515
	Gabi4715g00001	349	SUPERFAMILY	WD40 repeat-like	5	308	IPR036322	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4715g00001	Gabi-Chr4715	45756	60255	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4715g00001	9	296	Eukaryotic Initiation Factors Gene Family	AT2G46290	29.141	1.50e-40	144

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4715g00001	K13137		-	gmx:100782712	662.914