Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4712g00002 ATGGGAAGAAGCCCTTGTTGTTTAAAGGTGGGACTGAATCGAGGTGCTTGGACAGCCCAGGAAGATAAAATCCTCCGAGAGTATATTAATGTCCATGGCCAAGGAAAATGGAACACGCTTCCCTTAAAAGCAGGTTTGAAACGTTGTGGTAAAAGTTGCAGACTTCGATGGTTGAATTATCTGAGACCAGATATTAAGAGAGGCAATATATCCCCAGATGAAGAAGACCTTATAATCAGACTTCACAAGCTCCTCGGAAACAGATGGTCTCTAATAGCTGGAAGGCTTCCTGGACGAACAGACAATGAAATAAAGAATTACTGGAACACTAATTTATGTAAAAAAGTTAATACAAGGAACGCACAGAAATCAAAGCTCTCGTCTGTTCCTAATGAGTCCCATGTGAGCAAGTCCATTGAACAACAGGAAACAGAGCCAGAGCCATTGCTAGTGAACGATGGTGCCAATAATTCAATCAGTAACAAAATGGAGACTGCGGGTGTGTGCGACGATGGAGGTTTGTCATTTCCCAGTGATGAGAAAGAACTCTCAACGGATTTGCTCTTAGATTTTGATGCTGGGGATATTTGCTTACCTGATCTTCTTAACTCGGATTTCTCACATGTATGCGATTTCAGTTACAACAACAACGATGAGTATCTATTACCTTTTTCGGATCAACCTTTCGTGTCCTCTCATGAAATTCACCTGGACACGACACAGATATGGTTTTGTGATGAAACAAATGTGGAAAATAACAACTTTTTTGAGGGGAATGATAATTGCTGTTAG 792 0.4091 MGRSPCCLKVGLNRGAWTAQEDKILREYINVHGQGKWNTLPLKAGLKRCGKSCRLRWLNYLRPDIKRGNISPDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLCKKVNTRNAQKSKLSSVPNESHVSKSIEQQETEPEPLLVNDGANNSISNKMETAGVCDDGGLSFPSDEKELSTDLLLDFDAGDICLPDLLNSDFSHVCDFSYNNNDEYLLPFSDQPFVSSHEIHLDTTQIWFCDETNVENNNFFEGNDNCC 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4712g00002 263 MobiDBLite consensus disorder prediction 123 145 - -
Gabi4712g00002 263 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi4712g00002 263 SMART sant 13 63 IPR001005 -
Gabi4712g00002 263 SMART sant 66 114 IPR001005 -
Gabi4712g00002 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi4712g00002 263 CDD SANT 16 61 IPR001005 -
Gabi4712g00002 263 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi4712g00002 263 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 155 - -
Gabi4712g00002 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi4712g00002 263 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi4712g00002 263 CDD SANT 71 112 IPR001005 -
Gabi4712g00002 263 Gene3D - 14 66 - -
Gabi4712g00002 263 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi4712g00002 263 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi4712g00002 263 Gene3D - 69 145 - -
Gabi4712g00002 263 FunFam Transcription factor TT2 70 143 - -
Gabi4712g00002 263 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4712g00002 Gabi-Chr4712 60925 62024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4712g00002 1 192 MYB Transcription Factor Family AT1G06180 49.744 1.81e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4712g00002 Myb_DNA-binding 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4712g00002 K09422 - gmx:100802704 306.219