Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4710g00002 ATGGCTGTAGAGGGAGTGATGGATTCTCCAAGCAAGAAGCCTCAAGGAGGATTCGCCAAAAAGAAAATGTTCTTTGGAATCAATGAACGTGTTGAGTTGAGGAGTGTTGAGGATGGGTTTCTGGGGTCATGGCACCCGGGGATAGTTATCCATTGTGAGAAGCTAAAGCGCCTTGTCAGATATGATAATATCTTAGATGATGATGAGATTAATAATCTTGAGGAGTTAGTGAATGTTTCTGAAGCTTTGGATGGTCAAAGTAGCTCTTCAGATTTCTATAAGCGCGGTTTCATTAGGCCAGTGCCTCCTTTGATTGAGTTTGATAAAAGGAACCTTAAATTTGGTGTGTGTGTTGATGTGAACTATCAGGAAGCTTGGTGGGAAGGTGTTATATTTGATCACAATGATGAGAAGGAGGAGAGGAGTGTGTTTTTCCCTGATTTGGGTGATGAAATGAATGTTGAAATTCACCAACTTCGGATTACTCAGGACTGGGATGAAGTTGCAGAGAAGTGGGAGCAGCGAGGGAAATGGGTGTTTCTTGAATTGATTGAGGAGTGTGAGAGGACATCATTTGTTGGAGTTTCAGCAAAGCAGATTTGGTATGATGTACGGGGAAAAAGTGATTTTAACAGGATTGGGGAGTGGACATTCAATGTGAAGGACTTATGGAGAGACATGGTATTGGATGTTGTTGATGAGTACTTTTCTCTTACTGCAGAAGAAGTTTTCTCAGTCTTAAACCTTCCAAGGAGTTTATTCAATGAAACACCAGAGGTGGAGTCTGTTGAACCTGTAGCTAATGGGGACTTGAACACAACATTACCTGAAAAGGAAATTTTGATGCAGAAAGATCCTCTTCCTCCATTTGAAGAGAAGTTTCAGGTTCTAGCTGTTTTGAGAATAATAGAGAAAAATATATCCTCAACTCGTTCAAGGTCCGGGCATTGGAAACCTCTTAAGTTTTCTGAAGTTGAATTATGTCCTGATGCTGTTAAGCAATATGCACTTGGTTCTAAGAGCATAGCAACTAGGAAACTTTGGACTAAAAAAGTACATAAACATCTTGCATACCTTGGATGGAAAATTGAGTGGACATCTAAATTTCGTGGGTATAAACGTTACAGGTACAAGTCACCTGATGAACAGGACCAGAAGTTTTACCTCTCACTCACTAAAGTTTGTAAAGTTATGCAAAATAACTCCAAAACAAACTTCTTGATGTCCCAAAATGATGAGAGTATAATGCATCATACCTTTGACTCCCATCTTTCACATGTGCCTCTTAATCCATCCGAAAAGATTCAGGATCCAGATACTTCTCTTGCAACTTTGCCACCTCCTCCTGTTGAAGTTGTAGATGAACCAGAATTTGCAGATGAACCGGCGTTTTGTCCTCAAGCTGTTGTGGAATATTATAATGCATTCAAAAAGAACAGGACTGATAAAAGAAAATGGATACAGAAAGCAAAGAAGCATCTGCTAGCAGAAGGATGGACTTTGGAACATCATCCAACTAATAAAAGAAGGGGAATTAAATATATATGTCCACAAAAGAAAATTTTTCTGACACTCCATGCAGCATGCGGATTTTGTATCAAAGAAAGCATTCCTAAATGGACTAATTCTGGCATGCAACTTGTAAATGAAAATGACTCAGTCATTAATGAGGAAAATGTTGATCAAGTTCAGAATGGTTATTTATTAAATAGAGTATCCCAATTGCCTCCGGAGAAACCTGCATTACATGGCATAGATGGCGTAGCTGCAAGTGGATCTACTGCAAATAGGAAGCGGAAACGCTTGAGTAATTCAAAGGCTAGCCTACCTAAGCGCCAAAGGAATGGATTACCTGTACGGGTGCTTAGATCAAGTAAAAGGGTGCAAGAGGTGTCTACCCCTTCTCTGTCACACCAGAAGCCACAAAATGTTCTGTCTTGGTTGATAGACCACAATGTAGTGCTACCAAGGTCTAAGGTTTATTACCTGGAAAAAAGCCGGTACCGTGCTATGGCTGAGGGGCGAATAACTCGTGATGGAATCAAATGTAACTGCTGTCAGACAGTTTACAGTCTTGTTGGCTTTGAAAAGCATGCTAGTGGTAGTAGTACCCCCAGACCTGCTGCTAATATCTTTTTGGAAGATTATGGTAGGTCACTCTTAGATTGCCAGATTCAAATAATGCAAGATTATAGGATAAGGGAAACTAAAGAAAAACCATGCAATGGTTTGTTTCAAGGGGAGAATGACTACATTTGTTCTGTTTGCCACTATGGTGGTGAACTTATTTTATGTGATCAATGTCCGTCTTCATTTCACAAGACATGTCTCGGTTTGGAGGATATCCCTGATGGTGACTGGTTTTGTCCATCGTGTCGTTGCGGGATTTGTGGCCAAAGCAAAATCAATGGAGATGAGGATGGACATTTCCTTGCTTGTACTCAGTGTGAAAATAAATATCATGTTAGGTGCGTGAAAAGTAGAGCTGTGGATGAATCAAGAAGGTATCAGGAAAACTGGTTCTGTGGAAAAAAGTGTGAAAAGATATATGAAGGCCTCAACAAACTGTTAGGAGTGCCAGTTACAGTGGGTTTGGGCAATCTAACTTGGACACTAGTGAAGTTCAGCAACTCTGAGAGTTGTAATCTTGGCAGTGCTAAAAGTGAATTGCTAGCAGAAAGTTACTGCAAACTCAACGTTGCTCTTTCAGTGATGCATGAATGTTTCGAGCCCCTAAAGGAACCTTTCTCTAGCAGAGATCTCGTGGAAGATGTTATATTCAGCAGATGGTCAGAGCTTAATCGGTTAAATTTCCAGGGTTTCTATACCGTACTTCTGGAAAGAAATGAAGAACTGATTAGTGTGGCAACCATTAGGATCTATGGAGATAAGGTTGCAGAAATACCTCTTGTTGGTACCAGATTACAGTATCGTCGACATGGAATGTGTCGCATTTTAATGAATGAGCTTGAAAAGAAGCTCATGCAATTAGGAGTTGAGAGGCTTGTGTTGCCTGCTATTCCTAGTGTGCTAGAAACGTGGACAAGTGCTTTTGGGTTTGCAGAGATGACAAATTTTGAGAGATCAGAATTTCTGGACCATACATTCCTAGATTTCCAGGGTACCATCATGTGCCAGAAGTGGTTGGAAAAGATTCCTTCTCCAGATTCAGTTTTGTCAAAAGATTCCCAACTAAAACAAATTGATGTTTTCAATGGAAGTTGTAGTGTTGACTTTGATAAGCCTTGTCCAGACTCTGAAGTATACCAAGCTAAAGAGATTGACAAAAGAGGGATGATGGATCAACAAATGAGGGAGTATGTCTCACCTCGGTCTATTTAG 3342 0.4034 MAVEGVMDSPSKKPQGGFAKKKMFFGINERVELRSVEDGFLGSWHPGIVIHCEKLKRLVRYDNILDDDEINNLEELVNVSEALDGQSSSSDFYKRGFIRPVPPLIEFDKRNLKFGVCVDVNYQEAWWEGVIFDHNDEKEERSVFFPDLGDEMNVEIHQLRITQDWDEVAEKWEQRGKWVFLELIEECERTSFVGVSAKQIWYDVRGKSDFNRIGEWTFNVKDLWRDMVLDVVDEYFSLTAEEVFSVLNLPRSLFNETPEVESVEPVANGDLNTTLPEKEILMQKDPLPPFEEKFQVLAVLRIIEKNISSTRSRSGHWKPLKFSEVELCPDAVKQYALGSKSIATRKLWTKKVHKHLAYLGWKIEWTSKFRGYKRYRYKSPDEQDQKFYLSLTKVCKVMQNNSKTNFLMSQNDESIMHHTFDSHLSHVPLNPSEKIQDPDTSLATLPPPPVEVVDEPEFADEPAFCPQAVVEYYNAFKKNRTDKRKWIQKAKKHLLAEGWTLEHHPTNKRRGIKYICPQKKIFLTLHAACGFCIKESIPKWTNSGMQLVNENDSVINEENVDQVQNGYLLNRVSQLPPEKPALHGIDGVAASGSTANRKRKRLSNSKASLPKRQRNGLPVRVLRSSKRVQEVSTPSLSHQKPQNVLSWLIDHNVVLPRSKVYYLEKSRYRAMAEGRITRDGIKCNCCQTVYSLVGFEKHASGSSTPRPAANIFLEDYGRSLLDCQIQIMQDYRIRETKEKPCNGLFQGENDYICSVCHYGGELILCDQCPSSFHKTCLGLEDIPDGDWFCPSCRCGICGQSKINGDEDGHFLACTQCENKYHVRCVKSRAVDESRRYQENWFCGKKCEKIYEGLNKLLGVPVTVGLGNLTWTLVKFSNSESCNLGSAKSELLAESYCKLNVALSVMHECFEPLKEPFSSRDLVEDVIFSRWSELNRLNFQGFYTVLLERNEELISVATIRIYGDKVAEIPLVGTRLQYRRHGMCRILMNELEKKLMQLGVERLVLPAIPSVLETWTSAFGFAEMTNFERSEFLDHTFLDFQGTIMCQKWLEKIPSPDSVLSKDSQLKQIDVFNGSCSVDFDKPCPDSEVYQAKEIDKRGMMDQQMREYVSPRSI 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4710g00002 1113 MobiDBLite consensus disorder prediction 588 614 - -
Gabi4710g00002 1113 CDD Tudor_Agenet_AtDUF_rpt1_3 25 103 - -
Gabi4710g00002 1113 Pfam Tify domain binding domain 674 726 IPR032308 -
Gabi4710g00002 1113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 795 849 IPR013083 -
Gabi4710g00002 1113 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 929 1028 IPR016181 -
Gabi4710g00002 1113 Pfam Agenet domain 29 103 IPR008395 -
Gabi4710g00002 1113 CDD PHD2_CHD_II 753 792 - -
Gabi4710g00002 1113 Gene3D - 898 1031 - -
Gabi4710g00002 1113 PANTHER PHD FINGER PROTEIN 12 462 1091 IPR042163 GO:0003714|GO:0045892
Gabi4710g00002 1113 SMART agenet_At_2 23 106 IPR014002 -
Gabi4710g00002 1113 SMART agenet_At_2 110 167 IPR014002 -
Gabi4710g00002 1113 Pfam PHD-finger 752 794 IPR019787 -
Gabi4710g00002 1113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 744 794 IPR013083 -
Gabi4710g00002 1113 SMART PHD_3 794 847 IPR001965 -
Gabi4710g00002 1113 SMART PHD_3 752 793 IPR001965 -
Gabi4710g00002 1113 SUPERFAMILY FYVE/PHD zinc finger 733 793 IPR011011 -
Gabi4710g00002 1113 SUPERFAMILY FYVE/PHD zinc finger 794 843 IPR011011 -
Gabi4710g00002 1113 ProSiteProfiles Zinc finger PHD-type profile. 750 795 IPR019787 -
Gabi4710g00002 1113 Pfam Acetyltransferase (GNAT) family 923 1004 IPR000182 GO:0016747
Gabi4710g00002 1113 CDD NAT_SF 944 1004 - -
Gabi4710g00002 1113 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 888 1038 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4710g00002 Gabi-Chr4710 58095 75062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4710g00002 586 992 PHD Transcription Factor Family AT5G58610 50.721 2.00e-126 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4710g00002 Acetyltransf_1 2.5e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4710g00002 - - aprc:113851199 1365.52