Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi470g00005 ATGATGGAGTCAATGGAATCATGTGTCCCACCAGGTTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTACTACCTGAGAAAGAAAGTAGCTTCTCAGAAGATTGATCTTGACGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATTGGGAATGAGGAGCAAAATGAGTGGTATTTCTTTAGCCACAAAGATAAGAAATATCCAACAGGAACGAGAACCAATAGAGCCACCATGGCAGGGTTCTGGAAGGCAACAGGAAGAGACAAGTCAGTGTTTGAACGAACAAAACTCATTGGCATGAGGAAGACCCTCGTTTTCTATGAAGGAAGAGCTCCTAATGGACGAAAAACTGATTGGATCATTCACGAGTATAGGCTTGAATCTGACGATAATGGAACTCCACAGGAGGAAGGATGGGTTGTGTGCAAAGCATTCAAGAAAAAAACTAACATCAAAACGAAGACTAATGAAGAATGGGATCCAAACTACTTATACAAGGAACAAGCAAGTAGCATCAGTTACATGATGGACCCAATTGATCTCATCTTAAAGCAGCCTCAGAGGATTTTAGCTCAAAATTTCTTGTATAAGCAAGAGATAGAAGCAGATAATTTGATCTTCATGAACCCACACCAATTGGTACAGCTTCCTCGGTTGGAAAGTCAATCTTTGCCATTACTAAAGAGGCAATGCTTAGTGTCCCAAATTTCAGACAATAACGAAAATGATGATCAAAAGGGATTATCCAACACCAACAACACAAAGAAAGTGACTGATTGGAGGGCTCTTGACAAGTTTGTGGCTTCTCAATTGAGTCAAGGAGACACGTATGAAACACAGGGAGTTTCATGCTTTGCAACCCATACCAACTCAGATTGTGACATTGGGATATGCACATTTGAAAAATGA 942 0.4087 MMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGNEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVFERTKLIGMRKTLVFYEGRAPNGRKTDWIIHEYRLESDDNGTPQEEGWVVCKAFKKKTNIKTKTNEEWDPNYLYKEQASSISYMMDPIDLILKQPQRILAQNFLYKQEIEADNLIFMNPHQLVQLPRLESQSLPLLKRQCLVSQISDNNENDDQKGLSNTNNTKKVTDWRALDKFVASQLSQGDTYETQGVSCFATHTNSDCDIGICTFEK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi470g00005 313 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Gabi470g00005 313 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Gabi470g00005 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 249 - -
Gabi470g00005 313 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Gabi470g00005 313 FunFam NAC domain-containing protein 18 162 - -
Gabi470g00005 313 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi470g00005 Gabi-Chr470 75789 79104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi470g00005 2 312 NAC Transcription Factor Family AT2G18060 56.948 3.55e-139 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi470g00005 NAM 2.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi470g00005 - - aprc:113869508 489.96