Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi470g00001 ATGAGAACTCGAAATTCCGATTCCTCTTCCAAATCCGCAACCCCTAAGAAGACACCGCCGGCGAGGAAATCCGCCACCAAAACCGCCGGTGAATCCCCTGCGGCAAAGCGCACTCCTGCCACCAAAACTAGAAGCGTCACGAAGAAGGAGGCCTCGCCGGCACCCGACCCGATCTCCGACTCCAATCCGGATCCATCGCCTCAGGAGCAGAAATCAGTGGGCAATGCTACCACTACAAAATCTGCAAAGAAGAGGACACCAGGGAGACCGAGAACTAAATCTTGTGCTGCTCCAAATTTGGGAGAACAGTTGGAGGCGGTGGCTGATGAAACTCCGATTGTGGATGATTTTGAGGCTGCAGAGAAAGTGGAAGAACCTGGAGGTGTTGAGAGTGAGAAAGAAGGGGAACAAGGTGTTGAGCCTGTTGGATTATCTGATGAGAAGGAACAAATGTCCATGGAAATGGATGAACCTGTTGTGAAAGTTTGCGAATCGGCGGATAAGGGGAAGAACGTAGTGGAAGTTGAAGAAACTGTTTCTCTGGATGCTTCTGGTTCTTTTAAAAATGCAGGGTGCACCATTGTGGACCTCAATATATCTGCGGATAATGAAGATTGTTCTGGTGCAATGGAGGGGGAGGAAGAGAAGATGGAAGAGGAGGGAGAGAAAGGAAAGGAGGAGTTGAAGGAACAGGAGGGGGAGAAAGAGTTTAAGGAACAGGTGGGAGAGAAAGGAAACGAAGAGTTGAAGGGTCAGGAGGGAGAGAAAGGAAAGGAAGAGTTGAAGGATAATGAGGGAGAGAAAGGAAAGGGAAAAGAAACAAACATTATTGAACACGAAGAGCACTCTAACACTGAGTCTTATAGTGTAGAAGTGAAAGCCCAGTTGCTAAAAGAAGATGTTAATCCTGAAAAAGATGGCGATGAAGGACCAAAGGATGGTGAAAAGTTAGATCTTGGAGAACAAGATGGGGAGGAACATTTTGAAGAAGATATGGAGGATCCTCCAGAAGAAACTGAGGCATTCGAACAGGAGCATATGGAATTGGAGGCCATTGCAAAGCAGCGAAAGATTAAGAAAGAACATGAGATATTTGTTGGCGGCCTGGATCGTGATGCTACAGAAGAAGATTTGAGAAAGGTTTTTCAGAGGATTGGTGAGGTAGTTGAAGTCAGGTTGCATAAAGATTCTTCAACAAATAAAAATAAAGGCTATGCTTTTGTAAAGTTTGCTAATAAGGAACATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGTAAACGATGTGGCACTGCACCCAGTGAGGATAATGATACATTATTCTTGGGAAATATTTGCAATACATGGACAAAAGAAGCTATTAAACAGAAGTTGAAGGATTATGGTATTGAAGGGGTTGAAAAAATTACACTTGTCCCAGATGTTCAACATGAAGGATTGAGCCGAGGCTTTGCATTCCTTGAGTTCTCTTGTCATGCTGATGCCATGCTTGCCTACAAGAGGCTTCAAAAGCCTGATGTCGTCTTTGGCCATGCTGAGCGAACTGCCAAGGTAGCTTTTGCTGAACCCATACACGAACCAGATCCAGAGATAATGGCACAAGTGAAGTCTGTCTTTATTAATGGTCTCCCTCCTCACTGGGAGGAAGATATCGTGAGGGAGCTGTTTAAATCTTATGGTGAAATTATAAGAATTGTACTAGCTCGGAATATGTCTACAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAATTGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGGCTTTCAAATCCTTTGCCTAAAACACAGGCAGTCAAGGGTGGCATGTGTGGTGGATTCCGAATTGGTCATTCTAGGGGTGGATCCTTTCCAAGACCTGGAAGGGGTTTTGGGCGGGGAAGACATCCCTTCAACAACTGGGGAAATTTCAACAGGGACAGGAGTTTCTATCATGGTGGACGCAGTCAAATTGAAAGAATGGGTTTGCGGGATGACCTTGATGTTAATATGTATCCAGATTTCCGTCAGAGGCAATTTGGCCCCCAAGGAGCTGCAAGGGGTGGACATCATGCAGGTAGCCGAGGTGCTGCATTTGCTGGTCCATCTAGACGTTATCATGATAGAGCATGGTATGGTATCCGTGATGGTGGCCCTAGTGAGCCTATTCCTCCAAGAAGGCCCTACTCACCAGGTAGACAGTTTGATGTGCCTTTTAGGGGAAGGCATTTTGATGATCCATATCTTGAGGATGACAGCATGCATGGGATGAAACGACCATTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGTCCCCGATTGGATTATGCAGATCCGTCTATATTTCATGGAAGTCGATACCATGATTCTCTTGGGGCCGGCAGCAGACAGTACCCACATGACTATTATGGTTCTGATTATGGTGGAGGTCCATATTCATCTTTTTATGGGGGTGATGGCTCTCATGGACATGGATACTATTATTAG 2574 0.4507 MRTRNSDSSSKSATPKKTPPARKSATKTAGESPAAKRTPATKTRSVTKKEASPAPDPISDSNPDPSPQEQKSVGNATTTKSAKKRTPGRPRTKSCAAPNLGEQLEAVADETPIVDDFEAAEKVEEPGGVESEKEGEQGVEPVGLSDEKEQMSMEMDEPVVKVCESADKGKNVVEVEETVSLDASGSFKNAGCTIVDLNISADNEDCSGAMEGEEEKMEEEGEKGKEELKEQEGEKEFKEQVGEKGNEELKGQEGEKGKEELKDNEGEKGKGKETNIIEHEEHSNTESYSVEVKAQLLKEDVNPEKDGDEGPKDGEKLDLGEQDGEEHFEEDMEDPPEETEAFEQEHMELEAIAKQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKDSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVEKITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVVFGHAERTAKVAFAEPIHEPDPEIMAQVKSVFINGLPPHWEEDIVRELFKSYGEIIRIVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHSRGGSFPRPGRGFGRGRHPFNNWGNFNRDRSFYHGGRSQIERMGLRDDLDVNMYPDFRQRQFGPQGAARGGHHAGSRGAAFAGPSRRYHDRAWYGIRDGGPSEPIPPRRPYSPGRQFDVPFRGRHFDDPYLEDDSMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPSIFHGSRYHDSLGAGSRQYPHDYYGSDYGGGPYSSFYGGDGSHGHGYYY 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi470g00001 857 FunFam Heterogeneous nuclear ribonucleoprotein Q 442 526 - -
Gabi470g00001 857 FunFam Heterogeneous nuclear ribonucleoprotein Q 527 678 - -
Gabi470g00001 857 CDD RRM_SF 364 433 - -
Gabi470g00001 857 MobiDBLite consensus disorder prediction 736 759 - -
Gabi470g00001 857 SUPERFAMILY RNA-binding domain, RBD 532 648 IPR035979 GO:0003676
Gabi470g00001 857 CDD RRM_SF 542 616 - -
Gabi470g00001 857 MobiDBLite consensus disorder prediction 218 287 - -
Gabi470g00001 857 MobiDBLite consensus disorder prediction 324 342 - -
Gabi470g00001 857 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 62 857 - -
Gabi470g00001 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 362 440 IPR000504 GO:0003723
Gabi470g00001 857 MobiDBLite consensus disorder prediction 1 156 - -
Gabi470g00001 857 Gene3D - 312 436 IPR012677 -
Gabi470g00001 857 MobiDBLite consensus disorder prediction 705 724 - -
Gabi470g00001 857 SMART rrm1_1 541 616 IPR000504 GO:0003723
Gabi470g00001 857 SMART rrm1_1 443 520 IPR000504 GO:0003723
Gabi470g00001 857 SMART rrm1_1 363 436 IPR000504 GO:0003723
Gabi470g00001 857 Coils Coil 214 234 - -
Gabi470g00001 857 MobiDBLite consensus disorder prediction 63 83 - -
Gabi470g00001 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 540 620 IPR000504 GO:0003723
Gabi470g00001 857 Gene3D - 528 684 IPR012677 -
Gabi470g00001 857 Gene3D - 441 526 IPR012677 -
Gabi470g00001 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 364 432 IPR000504 GO:0003723
Gabi470g00001 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 444 508 IPR000504 GO:0003723
Gabi470g00001 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 542 608 IPR000504 GO:0003723
Gabi470g00001 857 CDD RRM_SF 444 507 - -
Gabi470g00001 857 FunFam Heterogeneous nuclear ribonucleoprotein Q 317 436 - -
Gabi470g00001 857 MobiDBLite consensus disorder prediction 203 342 - -
Gabi470g00001 857 MobiDBLite consensus disorder prediction 297 323 - -
Gabi470g00001 857 MobiDBLite consensus disorder prediction 115 156 - -
Gabi470g00001 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 442 527 IPR000504 GO:0003723
Gabi470g00001 857 MobiDBLite consensus disorder prediction 6 21 - -
Gabi470g00001 857 SUPERFAMILY RNA-binding domain, RBD 363 507 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi470g00001 Gabi-Chr470 6268 18124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi470g00001 364 618 Eukaryotic Initiation Factors Gene Family AT1G22760 19.149 1.34e-07 53.5