Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4709g00001 ATGGGAAGGCACTCTTGCTGCTTCAAACAGAAGTTACGGAAAGGCCTCTGGTCTCCAGAGGAAGACGAGAAGCTTTTGAATTACATCACAAAACATGGTCATGGATGTTGGAGTTCGGTCCCCAAACTAGCTGGTTTGCAAAGGTGTGGGAAAAGCTGCAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTAAAGAGAGGTGCATTCTCACAGCAGGAAGAGAATTTGATTGTTGAACTTCATGCAGTCCTTGGCAATAGGTGGTCTCAGATTGCAGCACAGCTACCAGGAAGAACTGACAATGAGATTAAAAATCTATGGAATTCATGCCTCAAGAAGAAGCTGAGGCAAAGTGGCATTGACCCAAACACACACAAACCACTCTCTGAGGTTGAGAACGACAAGGACAAGCCACTCACAGCCGACAAAAGCAATCAGAATAAAGCCTCAGTGGGATCCAATGAAGTGAGTTTGGTTGAGCCAGCAAAACTCAACTCAACTTCCATGCCTGTTGAGAGATACCCTCTGGAAGTTTCTACTAGCTCCAAGATCAACAACACTAGCAGCAGCAATTTGACCAACACCAATCCCACCCAGGAATTATTCCTAGAAAGGTTTGGTACCTGCCATGAAAGCTCCATCACCACCAGTTGCAAACCATCTGATATGGTTGGATCATATTTTTCTTTTCAACAGTTGAACTATGTACCAAATATGGGTCTCTCTGCAAATCCCAACACCTCACTTTGCTTCCTACCAACATCCACTTCTTCCCAGGTTATCACAATTTTCCCAACTCAAACACATGTGAAGCCCACTATGAGTCTCCATTCTAATAACAATCCTTCAATATCCTCTGGCGATATTGATGGGGTTCAAAACTGGGAATCCAGTAACTTCAGCAACAGTAACATGGCAAATAAAAGCAATGGGAGCAGTAACAGTATCCAGTTACAAAGCAGCACAAACTTCCTTGACAACAACACTCTGACGTGGGGGCTAGCAGAGTCTATGAAGGTTAATAAAGAGAATACTCATGTGTCCCTACAAGCAGAACAAGAGGAAATAAAATGGTGTGAGTATCTTAACACCCCGTTTCTTCTAGGGAACACAGTGCAGAATCAAACCTCTCAATCTATCTACAGTGAGATTAAACCAGAAACAGGCTTCATAGCAGACGAGTCAAGTACTAGTTGGCACCATAGCCAGCAGCAACCACCACCTTTTCAACTTTCAGATATATATACCAAGGATCTGCAGAGATATTCAGTGGCTTTTGGACAAACCCTGTAG 1296 0.436 MGRHSCCFKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQSGIDPNTHKPLSEVENDKDKPLTADKSNQNKASVGSNEVSLVEPAKLNSTSMPVERYPLEVSTSSKINNTSSSNLTNTNPTQELFLERFGTCHESSITTSCKPSDMVGSYFSFQQLNYVPNMGLSANPNTSLCFLPTSTSSQVITIFPTQTHVKPTMSLHSNNNPSISSGDIDGVQNWESSNFSNSNMANKSNGSSNSIQLQSSTNFLDNNTLTWGLAESMKVNKENTHVSLQAEQEEIKWCEYLNTPFLLGNTVQNQTSQSIYSEIKPETGFIADESSTSWHHSQQQPPPFQLSDIYTKDLQRYSVAFGQTL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4709g00001 431 Gene3D - 11 67 - -
Gabi4709g00001 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gabi4709g00001 431 MobiDBLite consensus disorder prediction 128 143 - -
Gabi4709g00001 431 CDD SANT 17 61 IPR001005 -
Gabi4709g00001 431 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi4709g00001 431 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi4709g00001 431 FunFam Myb transcription factor 11 67 - -
Gabi4709g00001 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gabi4709g00001 431 MobiDBLite consensus disorder prediction 119 157 - -
Gabi4709g00001 431 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gabi4709g00001 431 Gene3D - 68 149 - -
Gabi4709g00001 431 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi4709g00001 431 SMART sant 66 114 IPR001005 -
Gabi4709g00001 431 SMART sant 13 63 IPR001005 -
Gabi4709g00001 431 CDD SANT 69 109 IPR001005 -
Gabi4709g00001 431 FunFam MYB transcription factor 68 140 - -
Gabi4709g00001 431 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi4709g00001 431 PANTHER MYB DOMAIN PROTEIN 55 1 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4709g00001 Gabi-Chr4709 19313 20903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4709g00001 1 431 MYB Transcription Factor Family AT1G09540 50.794 2.38e-123 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4709g00001 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4709g00001 K09422 - qsa:O6P43_010970 607.831