Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4702g00003 ATGTCTGAGACTGAAGGTATCAGGCTATTTGGCAGGAAGATTCCGTTACCGGAATATCAGATTCCGGCCAACTCTGGAACCGTGGATGCTTGCAGCAGCATAAAGAAAACACAAGTGGAAATACCTTGTGCAGAAAACTCTGAGCAACAAGAGAATTCTTCTGATTTAAGGGATAGTAAACAAGAGCCCCAACATAATGTGCAGGAAAATGAGCTAATAGTAAATCCCAAGCCTGTGGAAGATAATATGAAGTCTGGTAGTACAGATCAAGATAAAATCTTAAAGAAACCAGACAAGATTCTTCAGTGTCCACGATGCAACAGTTTGGACACCAAGTTTTGTTATTTCAACAACTATAATGTTAATCAACCTAGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGGAGGAAGAATAAGCACCTAGCCTCTCAATACCAGCACATTATAGTAACCTCTGATGGGATTCCAACATCAACAGACTCATCTGGTCACCAACATATCTCAGGTCTAGAATCCTCAGCTTCTTTCATGTCTTTGACAGATAATGGGACTGTATTGAAATTTGGTCCAGATACCCCTCTCTGTGAATCAATGCTTAATCTTAGAGACCAGAAAAGAAGTGTTGATGCAACAACTCCTACCAGTTGTGTAGAAAATGGAGAGGAACCATCCTTATGTGGATCTTCTGTGACAAATACTTGTACTCAAGGAAATGAATTATCAGAACATAACAACACATCAAATTTGTTGCAGTGTTACCCAGTTCCTCCATGGGTATTACCTTGGAATCCAGGTTGGAATAATGTTGCTTCCATGACAACTGTTCATCAATCTTCAGCATCCATGTGTAACCCATATAGCAATGGTCCCACTGCAATGCAATGGTGTACCACACCAATGGTGGGAATTCCAGGCATTTGTCCACCAAGCATTCCTTTGCAACTTGTATCAACATCATACTTGAGTGGAACACCTCTTTGGGCTGCTGGAACTGGGACAGCATCAATAGGATCCAATGCTTGCCTTTCACCTTCTTCCTCCACTAGTAACAGTTGCTGTTCAGGCAATGGCTCTCCAACCCTGGGCAAACACACTAGAGATACAGTTTTAACATATGAAGAGAAATCAGAGAATTGTGTTTTATTTCCAAAGACCATTAGAATTGATGACCCAAATGAGGCCTCAAAAAGTGCTATATGTGCTACATTAGCTATCAAGCCTCATAAGCAGCAGCAATCTGTATCAAATGGTGTTATCTTGGAAACATTAGAACCTGAAGGAGAAGGAAAAGACCCTTTATTGGGTGCCTCTCAAAACTTGGAAGCCAACCCAGCAGCTATTTCCCGTACTCATGCAATACAGGAGATCATATAA 1419 0.4144 MSETEGIRLFGRKIPLPEYQIPANSGTVDACSSIKKTQVEIPCAENSEQQENSSDLRDSKQEPQHNVQENELIVNPKPVEDNMKSGSTDQDKILKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYQHIIVTSDGIPTSTDSSGHQHISGLESSASFMSLTDNGTVLKFGPDTPLCESMLNLRDQKRSVDATTPTSCVENGEEPSLCGSSVTNTCTQGNELSEHNNTSNLLQCYPVPPWVLPWNPGWNNVASMTTVHQSSASMCNPYSNGPTAMQWCTTPMVGIPGICPPSIPLQLVSTSYLSGTPLWAAGTGTASIGSNACLSPSSSTSNSCCSGNGSPTLGKHTRDTVLTYEEKSENCVLFPKTIRIDDPNEASKSAICATLAIKPHKQQQSVSNGVILETLEPEGEGKDPLLGASQNLEANPAAISRTHAIQEII 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4702g00003 472 ProSitePatterns Zinc finger Dof-type signature. 103 139 IPR003851 GO:0003677|GO:0006355
Gabi4702g00003 472 Pfam Dof domain, zinc finger 98 155 IPR003851 GO:0003677|GO:0006355
Gabi4702g00003 472 PANTHER CYCLIC DOF FACTOR 2 4 470 IPR045174 GO:0003700|GO:0006355
Gabi4702g00003 472 ProSiteProfiles Zinc finger Dof-type profile. 101 155 IPR003851 GO:0003677|GO:0006355
Gabi4702g00003 472 MobiDBLite consensus disorder prediction 51 65 - -
Gabi4702g00003 472 MobiDBLite consensus disorder prediction 42 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4702g00003 Gabi-Chr4702 53032 55503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4702g00003 6 470 C2C2-Dof Transcription Factor Family AT5G39660 32.892 4.50e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi4702g00003 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4702g00003 - - gmx:100813787 701.049