Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4701g00068 ATGATTGCTATGGCTAATGTTGTTGTTGTTGTCGTCGATGTTCTTGGGGTAGCTACTCTTCCTCTGCCTCCATTGCCCAAAGCAAATGCTTTCACTTTCAGCTATAATATTAAGAGCCAAAGACAGAGACTTTATCTGAATTGCTCCCAAACCAACCAAAGAACAACCTCATTCCCTTCTTCCTTATCATTTCCTCTCAGAAACAAAGGTTATTCCTCTGTGTTGGCATGTCTCCCTCCTCCTGCTTCTGAATCCTCAAGTTCATCTTCCAATTCTAGACCCACTTCTTCTGCTCCTTCAACTAGGCTCTATGTCAGTGGGCTATCATTTCGTACCACTGAAGAGAGCTTGCGAAATGCATTTAAAAATTTTGGTCAACTAGTGGAAGTCAATCTGGTGATGGACAAAATTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGTTATGCAACAGAAGAGGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGGAGGGTCATATTTGTGGAAGTTGCCAAACCACGTTCAGAACTATGGCAAAGACCCAAGCAAAACACTAGACAGTAA 582 0.4227 MIAMANVVVVVVDVLGVATLPLPPLPKANAFTFSYNIKSQRQRLYLNCSQTNQRTTSFPSSLSFPLRNKGYSSVLACLPPPASESSSSSSNSRPTSSAPSTRLYVSGLSFRTTEESLRNAFKNFGQLVEVNLVMDKIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELWQRPKQNTRQ 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4701g00068 193 SMART rrm1_1 102 175 IPR000504 GO:0003723
Gabi4701g00068 193 SUPERFAMILY RNA-binding domain, RBD 90 190 IPR035979 GO:0003676
Gabi4701g00068 193 PANTHER NUCLEOLAR PROTEIN 8 77 185 - -
Gabi4701g00068 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 172 IPR000504 GO:0003723
Gabi4701g00068 193 Gene3D - 77 190 IPR012677 -
Gabi4701g00068 193 SMART rrm2_1 102 175 IPR003954 GO:0003676
Gabi4701g00068 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Gabi4701g00068 193 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4701g00068 Gabi-Chr4701 828442 831944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4701g00068 101 193 Eukaryotic Initiation Factors Gene Family AT4G34110 28.866 1.51e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4701g00068 - - gmx:100305561 233.417