Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4701g00064 ATGGTCAGAAAGAAGAGAACTGAAGGACCTAGCGGGGGTGAAAGCTCTGAGGGTCAACGTCCTCCTGAAAGGACTGCACCACCACCACAACAGGCGGCTGCAGCAGGAGGGGCAGCACCCCAAGGAGGTAGAGGTTGGGGTCCCCAAGGAGGACGTGGGGGACGTGGTGGTCGTGGGATGCCACAACAGCAGTATGGTGCCCCCCCTGACTATCAAGGTAGGGGGAGGGGAGGGCCTTCTCCTCAGCAAGGAGGTCGAGGAGGATATGGGGGTGGCCGTGGCAGCGGCGGTGCTGTGGGCAGTGGCCGAGGCATAGGTCCTTCATATGGTGGCCCATCTCGACCACCAGTCCCCGAGCTGCACCAAGCAACCTCAGTTCCACATCATGCTGGGGTGACTCCTCAGCCTACATCACCTGAGGCCAGTTCTTCTTCCCAGCCGCCGGAAACGTCCCAGTTGGAAACACAAATGGGGCAGATGACAATTCATTCTGAAGCTGCAGCTGCTGCTGCTCCTCCCTCAAGTAAATCAATGAGGTTTCCCCTTCGCCCTGGAAAGGGTAGTTATGGCACCAAATGTATTGTTAAGGCCAATCATTTCTTTGCTGAGTTACCCAATAAAGATTTGCATCAGTATGATGTAACAATTACTCCAGAAGTTACTTCAAGAGGTGTAAACCGTGCTGTTATGGAGCAGTTAGTGAGGCTGTATCGAGAGTCACATCTTGGAAGGAGACTTCCAGTTTATGATGGGCGCAAGAGCCTCTATACAGCTGGTGCCCTTCCTTTTATGTTGAAGGATTTTAGAATCACCCTCATTGATGACGATGATGGAACGGGAGGGCAGAGGAGGGAGAGAGAATTCACAGTTGTCATAAAATTTGCTGCACGGGCGGACCTTCACCATTTAGGACTCTTTTTGGAGGGGAGGCAAACTGATGCACCTCAAGAAGCTCTTCAAGTTCTTGACATTGTTCTTCGCGAACTCCCCACCACAAGGTATTGTCCGGTAGGAAGGTCATTTTATTCTCCTGACCTAGGAAGGAGGCAGCCATTGGGAGAGGGGTTGGAAAGCTGGCGTGGCTTTTATCAGAGTATTCGTCCCACTCAGATGGGACTATCTCTGAATATTGATATGTCATCAACTGCTTTTATCGAGCCATTGCCAGTAATCGACTTTGTAACACAACTGTTGAACAGGGATGTGTCGAGTCGACCACTTTCGGATGCTGATCGTGTTAAGATCAAGAAAGCTCTTAGAGGGATTAAGGTTGAAGTAACACATCGCGGAAACATGCGGAGAAAATATCGTATCTCTGGCCTGACTTCGCAGGCTACAAGAGAGCTGACGTTCCCTGTGGACGAGAGGGGAACAATGAAATCGGTTGTTGAATACTTCTCCGAGACATATGGTTTTGTAATCCAACATACGCAGTGGCCATGCTTACAAGTTGGAAATACTCAGCGACCTAATTATCTTCCAATGGAGGTTTGCAAGATAGTGGAAGGCCAGAGGTACTCAAAGAGGCTGAATGAGAGGCAGATTACTGCTTTGCTAAAAGTCACATGCCAGCGTCCTGTTGAGAGGGAGCGTGATATTATGCAGACTGTACATCATAATGCCTACCATGAAGATCCTTATGCCAGAGAATTTGGAATCAAAATCAGTGAGAGGCTTGCTCAAGTCGAAGCTCGCATCCTACCTGCTCCTTGGCTCAAATATCATGATACGGGTAGAGAAAAGGATTGCCTGCCTCAAGTTGGCCAATGGAATATGATGAACAAGAAAATGGTTAACGGTGGAACAGTCAATCACTGGTTCTGCATAAACTTTTCAAGGAATGTTCAAGATAGCATTGCACGGGGTTTTTGCTATGAACTTGCACAGATGTGTTATATATCTGGCATGGCATTTAATCCAGAGCCAGTAGTTCCCCCACTCAGTGCTCGTCCTGACCAAGTAGAAAAAGTTTTGAAAACTCGGTATCATGATGCCAAGAGCAAACTGCAGGGAAAGGAGCTTGATTTGCTCATTGTTATTTTGCCTGATAATAATGGGTCTCTCTATGGAGACCTTAAACGTATATGTGAGACAGATCTTGGGCTTGTTTCCCAGTGTTGTTTAACTAAGCACGTCTTTAAAATGAGCAAGCAGTACCTTGCAAATGTTGCATTGAAAATTAATGTGAAGGTTGGAGGAAGGAACACCGTGCTTGTTGATGCGCTCTCACGACGCATCCCGCTTGTGAGTGACAGGCCCACAATTATTTTTGGTGCTGATGTGACTCATCCACATCCTGGAGAGGATTCAAGTCCATCAATTGCGGCTGTTGTGGCTTCGCAAGATTGGCCTGAAATTACAAAGTATGCCGGTTTGGTTTGTGCCCAAGCACATCGACAGGAGCTAATTCAAGATCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACATTATCTGGCGGAATGATCAAAGAACTTCTTATATCTTTTCGGAGGGCTACAGGGCAGAAGCCACAGCGTATCATATTTTACAGGGATGGTGTGAGCGAGGGGCAGTTTTATCAAGTTTTATTGTTTGAGCTTGATGCTATCCGAAAGGCTTGTGCATCGCTTGAACCCAACTATCAGCCTCCTGTGACATTTGTGGTGGTTCAAAAGCGACATCACACCAGGCTCTTTGCCAGCAACCATCATGACAGGAGTTCTGTTGACAGAAGTGGCAATATATTGCCTGGCACTGTTGTAGACTCTAAGATCTGCCATCCAACTGAATTTGACTTTTATCTTTGTAGTCATGCTGGAATACAGGGTACAAGCCGTCCAGCTCATTATCATGTGCTTTGGGATGAAAACAATTTTACTGCTGATGCTTTGCAAGTGCTTACAAACAACCTGTGCTACACATATGCTAGATGCACGCGTTCTGTTTCAATTGTGCCCCCTGCATATTATGCTCATTTGGCTGCATTTCGTGCACGATTTTATATGGAACCTGAGACATCTGATAGTGGGTCTATGACAAGTGGTGCTGTTGCTGGTCGTGGAATGGTAGGTGGTGCAGGACGGAGTACCCGTGCACCTGGTGTTAATGCTGCTGTTAGACCCCTTCCAGCCCTCAAGGAGAATGTTAAGAGGGTTATGTTTTATTGCTAA 3153 0.4735 MVRKKRTEGPSGGESSEGQRPPERTAPPPQQAAAAGGAAPQGGRGWGPQGGRGGRGGRGMPQQQYGAPPDYQGRGRGGPSPQQGGRGGYGGGRGSGGAVGSGRGIGPSYGGPSRPPVPELHQATSVPHHAGVTPQPTSPEASSSSQPPETSQLETQMGQMTIHSEAAAAAAPPSSKSMRFPLRPGKGSYGTKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGRRLPVYDGRKSLYTAGALPFMLKDFRITLIDDDDGTGGQRREREFTVVIKFAARADLHHLGLFLEGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFSETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYHEDPYAREFGIKISERLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFSRNVQDSIARGFCYELAQMCYISGMAFNPEPVVPPLSARPDQVEKVLKTRYHDAKSKLQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTLSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDRSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGMVGGAGRSTRAPGVNAAVRPLPALKENVKRVMFYC 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4701g00064 1050 ProSiteProfiles Piwi domain profile. 676 997 IPR003165 GO:0003676
Gabi4701g00064 1050 Gene3D - 566 739 - -
Gabi4701g00064 1050 MobiDBLite consensus disorder prediction 1 157 - -
Gabi4701g00064 1050 CDD PAZ_argonaute_like 387 501 - -
Gabi4701g00064 1050 FunFam Protein argonaute-2 381 507 - -
Gabi4701g00064 1050 Gene3D - 745 1050 IPR036397 GO:0003676
Gabi4701g00064 1050 Pfam PAZ domain 392 517 IPR003100 GO:0005515
Gabi4701g00064 1050 SMART Piwi_a_2 676 997 IPR003165 GO:0003676
Gabi4701g00064 1050 Pfam N-terminal domain of argonaute 192 326 IPR032474 -
Gabi4701g00064 1050 SUPERFAMILY Ribonuclease H-like 662 997 IPR012337 -
Gabi4701g00064 1050 MobiDBLite consensus disorder prediction 128 157 - -
Gabi4701g00064 1050 Pfam Piwi domain 677 996 IPR003165 GO:0003676
Gabi4701g00064 1050 FunFam Argonaute 10 566 739 - -
Gabi4701g00064 1050 FunFam protein argonaute 10-like 745 1050 - -
Gabi4701g00064 1050 SMART PAZ_2_a_3 392 524 IPR003100 GO:0005515
Gabi4701g00064 1050 SUPERFAMILY PAZ domain 194 539 IPR036085 GO:0005515
Gabi4701g00064 1050 CDD Piwi_ago-like 546 996 IPR045246 -
Gabi4701g00064 1050 Pfam Glycine-rich region of argonaut 66 170 IPR024357 -
Gabi4701g00064 1050 Pfam Argonaute linker 1 domain 336 386 IPR014811 -
Gabi4701g00064 1050 ProSiteProfiles PAZ domain profile. 388 502 IPR003100 GO:0005515
Gabi4701g00064 1050 SMART DUF1785_2 335 387 IPR014811 -
Gabi4701g00064 1050 Gene3D paz domain 381 506 - -
Gabi4701g00064 1050 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 168 998 - -
Gabi4701g00064 1050 Pfam Argonaute linker 2 domain 528 574 IPR032472 -
Gabi4701g00064 1050 Pfam Mid domain of argonaute 585 660 IPR032473 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4701g00064 Gabi-Chr4701 766377 773633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4701g00064 70 1050 Eukaryotic Initiation Factors Gene Family AT1G48410 81.763 0.0 1625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4701g00064 K11593 - gmx:100780375 1783.84