LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4701g00051	ATGGCATCCTCCTCTTCCTTTTTCTACGATGTGTTCCTCAGTTTCAGAGGCACTGATACTCGCTACGGTTTTACTGGCAATCTTTACAAAGCTCTTTCTGACGCGGGAATTCGTACCTTCATTGATGATGAGGAGCTTCAGAGAGGGGAGGAAATCACATCATCACTTCTCAAGGACATCAAAGACTCCAGGAATGCTATTATTGTGCTGTCTAAGAATTATGCATCTTCTTCATTTTGCTTAGAAGAACTTTCCAACATCATTGACCATGTTTATAGAAAGGGTCGTTTGGTTTTTCCAATTTTTTATAAGGTGGATCCTTCTGATGTGCGACATCAGAGATGTAGTTACGGAGAAGCATTGGTTAATCATGAAAAGAAGTTCAACGCTAATAAGGAGAGGTTGCAGAAATGGAGGACGGCTCTACAGCTAGTAGCTAACTTGTCTGGCTTTCATTTAGAACATGGGGACAGATCATATGAGTACGATTTTATTGAGAGGATCGTCAAAGACGTCTCCAGCAAGATTAATCGTGTTCCTTTATCTGTTGCAAAGCACCCAGTTGGACTGGAGTCTCGAGTAGAAGAAGTAAAGTTGCTTATGGATATGGAATCTGATGATAGGGTTCACATGGTAGGGATCCATGGAATTGGTGGAGTTGGAAAGACGACACTTGGTCTAGCAGTTTATAATTCTGTTGCTGAATATTTTACCTGCTTATGTTTTCTTCAAAATGTGAGAGAAAACTCAAACAGTAAAGGGTTATCACATCTCCAAGAGATCCTTCTTTCTGAAATGTTTGGAGGGAAGAAAATTGAGTTTGCAAGTATCCAAAAAGGAATTTTAGAAATACAGAATAGGCTCCACAGAAAGAAGGTTCTTTTGATTTTAGACGATGTTGACAAACTGGAGCAGTTAGATGCTGTTGCTGGAAGTCCTAATTGGTTTGGTCCTGGCAGCAGAGTCATAATCACGACTAGGGACAAACAGTTGCTAGCATGTCACAAGGTTGAAAAAATTTATGAGGCGAAGGAATTGAATAGAAAAGATGCTCTTCAACTGCTAAGATGGAATGCTTTTAAAACTGACTCAGTTGATCCAAGTTACACCAACGTTTTAAATCGTGCGTTAACTCATACTTTTGGCCTTCCATTGGCTTTGGTAGTAATAGGATCCAACATGTTTGGAAAAAGTATAGGAGATTGGGAATCTGCTCTAAATGAGTATGAAAAAAATGGCAATAAAAAGATCCAAGAGATACTTAAAGTAAGCTATGATGCTTTGGAGGGAAAAGAAAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATCCATTGGAAAATGTCCAAGATATTCTTAATGCTCATTATGGTGAGGGTATGAACTATCATGTTAAAGTGTTGGTTGAAAAGTCTCTCATAAAAATTGATTTGTATGGTAAGGTGACTCTACATGACTTGATAGAAGACATGGGTAAAGAAATTGTCCGACAGGAATCACCAAATAATCCTGGGGAACGCAGTAGGTTATGGTTCCATAAAGATATTGTTGATGTTTTAGAAGAAGATATGGGAACTAATAAAATTGGAATCATATATTGGAAACCCCCCCATTTTGATAAAGAAGTGGGATGGAGTGGAAAGGCATTTGCGAAGATGAAAAACCTCAAGACACTTATTATTAGTGGTGGTTGTTTTTCAAAACCTCCGGAACATCTTCCAAATAGTTTAAGAATACTGGAATGGGAGGGATATCCTTCACAATATTTACCATCTGATTTTCATCCAAAGAAACTTTTCATATGCAAAATATTTTATAGTCGTTTTACGTCACCCGAGTCATTGCAGAAGTGTGTGAATATTAGAGTTTTACGTTTTGACAGTTGTGGAGGTCTAACACATATACCTGATGTATCTGGTCTCCCACATTTAGAAGAATTGTCATTTCACCTTTGTTGGAAATTAACTACAATTCATGATTCAGTTGGGTTAGTGGATAAACTTAGAATATTGAATTGTTCATATTGCACAAGGCTTCGAGCTTTTCCTCCCTTGAAGTTGACTTCTCTTGAAGAACTCGATCTTGTGGGATGCTCTAGACTTGAGAGTTTTCCAGAAATATTAGGAGAGATGAAAAATATAAAATATCTTGACTTGTCTCAAACCCATATAAAAGAATTGCCATCTTCATTTGAAAATCTTACCGGGCTTCGAGAATTACGTGCCACAGATTGTGGAATTGTTCAGTTACCAAGTAGCATTGTCAAAATGCGAGAACTGGCTGTGATTGTGGGTATGCGATTGAACTTGGGTTCATTGCCAAAAGTGGGCTCAATGGTGTCTTCAAACATAGAACGTCTTGAGCTCAAGTCGTGCAACGTGTCAGATGAATTTCTTGCAATGGGTCTCACCTGGTTTGCTAATGTGAAATATTTAAACCTAAGTGGGAATAAATTTACAATTATTCCTGAATGCATCAAAGAATGTCACCTTTTAAGGAAGCTTAATTTGGATGATTGCTGGAAACTTCGAGAAATTAGAGGGATTCCACCAAACTTAAATCATTTCTCTGCAGCAAAATGCTCATCCTTGACTTTCAAGTCTATAAGCAAGTTACTGGATCAGAAACTTCATGAGGCTGGAAACACCAGGTTTTGTTTGCCTGGAATTATAGGGATGCCAGAGTGGTTTGAGTCCAGCAACCGCATGAGACGGCCAATTTCATTCTGGTTTCGTAACAAGTTCCCTGCCATTGCTGCTCTGTGTTTTGGAAATGACTGGAATAATGCAACCACCTTGATCATCAATGGCAACAAAGGTTTCGAAACTGGTTGGCCTGACAACCAGCTATGGGATCATACATATCTTTTTGGTATGCAACCAGAAGATCATATTAAGCTGGATGAAGTGCCTTTAAAAAATGAATGGAACCGTGTGGAGGTTAAGTGTGAATCACGAATTGGAATCCATGTATTCAAAGACAAAAATAGCACGGAGGATATTCGATTCACTAATCCTGATCTGAGTAGTAATTACCTGATTCTGAACGTGACGAAGGATGGGTTGTGA	3075	0.3854	MASSSSFFYDVFLSFRGTDTRYGFTGNLYKALSDAGIRTFIDDEELQRGEEITSSLLKDIKDSRNAIIVLSKNYASSSFCLEELSNIIDHVYRKGRLVFPIFYKVDPSDVRHQRCSYGEALVNHEKKFNANKERLQKWRTALQLVANLSGFHLEHGDRSYEYDFIERIVKDVSSKINRVPLSVAKHPVGLESRVEEVKLLMDMESDDRVHMVGIHGIGGVGKTTLGLAVYNSVAEYFTCLCFLQNVRENSNSKGLSHLQEILLSEMFGGKKIEFASIQKGILEIQNRLHRKKVLLILDDVDKLEQLDAVAGSPNWFGPGSRVIITTRDKQLLACHKVEKIYEAKELNRKDALQLLRWNAFKTDSVDPSYTNVLNRALTHTFGLPLALVVIGSNMFGKSIGDWESALNEYEKNGNKKIQEILKVSYDALEGKEKSVFLDIACCFKGYPLENVQDILNAHYGEGMNYHVKVLVEKSLIKIDLYGKVTLHDLIEDMGKEIVRQESPNNPGERSRLWFHKDIVDVLEEDMGTNKIGIIYWKPPHFDKEVGWSGKAFAKMKNLKTLIISGGCFSKPPEHLPNSLRILEWEGYPSQYLPSDFHPKKLFICKIFYSRFTSPESLQKCVNIRVLRFDSCGGLTHIPDVSGLPHLEELSFHLCWKLTTIHDSVGLVDKLRILNCSYCTRLRAFPPLKLTSLEELDLVGCSRLESFPEILGEMKNIKYLDLSQTHIKELPSSFENLTGLRELRATDCGIVQLPSSIVKMRELAVIVGMRLNLGSLPKVGSMVSSNIERLELKSCNVSDEFLAMGLTWFANVKYLNLSGNKFTIIPECIKECHLLRKLNLDDCWKLREIRGIPPNLNHFSAAKCSSLTFKSISKLLDQKLHEAGNTRFCLPGIIGMPEWFESSNRMRRPISFWFRNKFPAIAALCFGNDWNNATTLIINGNKGFETGWPDNQLWDHTYLFGMQPEDHIKLDEVPLKNEWNRVEVKCESRIGIHVFKDKNSTEDIRFTNPDLSSNYLILNVTKDGL	1024

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4701g00051	1024	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	176	439	IPR027417	-
	Gabi4701g00051	1024	SUPERFAMILY	L domain-like	540	900	-	-
	Gabi4701g00051	1024	Gene3D	-	345	429	IPR042197	-
	Gabi4701g00051	1024	PRINTS	Disease resistance protein signature	287	301	-	-
	Gabi4701g00051	1024	PRINTS	Disease resistance protein signature	380	394	-	-
	Gabi4701g00051	1024	PRINTS	Disease resistance protein signature	687	703	-	-
	Gabi4701g00051	1024	PRINTS	Disease resistance protein signature	211	226	-	-
	Gabi4701g00051	1024	Gene3D	Ribonuclease Inhibitor	706	883	IPR032675	-
	Gabi4701g00051	1024	ProSiteProfiles	TIR domain profile.	7	176	IPR000157	GO:0007165
	Gabi4701g00051	1024	Pfam	NB-ARC domain	193	427	IPR002182	GO:0043531
	Gabi4701g00051	1024	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	9	755	IPR044974	GO:0006952
	Gabi4701g00051	1024	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	151	IPR035897	-
	Gabi4701g00051	1024	SMART	till_3	8	148	IPR000157	GO:0007165
	Gabi4701g00051	1024	FunFam	Disease resistance protein (TIR-NBS-LRR class)	5	178	-	-
	Gabi4701g00051	1024	SUPERFAMILY	"Winged helix" DNA-binding domain	415	523	IPR036390	-
	Gabi4701g00051	1024	Gene3D	-	177	341	IPR027417	-
	Gabi4701g00051	1024	Gene3D	-	8	176	IPR035897	-
	Gabi4701g00051	1024	Pfam	TIR domain	9	181	IPR000157	GO:0007165
	Gabi4701g00051	1024	Gene3D	Ribonuclease Inhibitor	544	705	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4701g00051	Gabi-Chr4701	538858	543168	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4701g00051	4	765	WRKY Transcription Factor Family	AT4G12020	31.692	2.45e-81	289

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4701g00051	-		-	gmx:100780257	1112.06