LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4701g00049	ATGGCTGTTCCATCATCCTCCTCCTCTTCCTTCGCCTACGATGTGTTCCTCAGCTTCAGAGGCACTGATACTCGCTACGGTTTCACTGGCAATCTCTACAAAGCTCTTTCTGACGCCGGAATTCGCACATTCATTGATGACGAGGATCTTCAGAGAGGGGAGGAAATCACACCATCACTTCTCAAGGCCATCCAAGACTCCAGGATTGCCATCATTGTTCTGTCTGCCAACTATGCATCTTCTTCATTTTGCTTAAATGAACTCTCCAACATCATTGATCGTGTTAATAATATAGAGGGTCGGAAGGTTTTTCCAATTTTTTATAAGGTGGATCCTTCTGATGTGCGACATCAGAGAGGTAGTTACGGAGAAGCATTGGTTAATCATGAAAAGAAGTTCAACGCTAATAAGGAGAGGTTCGAGGATAATAGGGAGAGGTTGGCGAAATGGAGGACGGCTCTGGAGCGAGTAGCTAACTTATCTGGCTATCATTTCAAACACGGGGATGAATATGAACACAAGTTTATTGAGAGCGTTGTCAAAGAGGTCTCCAAGAATATTAAGCGTGTCCCTTTTCCTGTTGCGGATTACCCTGTTGGACTGGAGTCTCAAGTAGAAGAAGTAAAGTTGCTTATGGATGCCGAATCTAAGGATGAGGTCCACATGGTAGGGATTCATGGAATTGGTGGAGTAGGAAAGACAACACTTGCTCTAGCAGTTTATAATTCTGTTGCTGAATATTTTGAGGGTTTATGTTTTCTTCAGAATGTAAGAGAAAATTCAAACACGCATGGGTTACAACATCTCCAAGAGATCCTTCTTAGAGAAATGTTTGGAGAGGAGAAAATTAAGTTAGCAAGTATCCCAAAAGGAAGTCTAGAAATACAACGTAGGCTACGAGAAAATAAGGTTCTTTTGATTTTAGATGATGTTGATGAGCTGGAGCAGTTACAGGCTCTTGGAAGACCTGATTGGTTTGGTCCCGGGAGCAGAGTCATCATCACAACTCGGGACAAACAGTTGTTAGCATGTCACGAGGTTAAGAAAACATATGCGGTGAAGGAGTTGAATGAAAAAGATGCTCTTGAACTGCTAAGATGGAAAGCTTTTAAAACCCTCGAAGTTGATCAAAAGTACAACAACGTTTTAAACCGTGCATTAACTTATGCTTCTGGCCTTCCGTTGGCTTTGGAAGTTATAGGTTCCAACTTGTTTGGAAAAAGTATAGATAAATGGGAATCTGCATTAAATCTGTATCAAAGGATTCCACCTAGAGACATTCAAAAGAAACTTAAAGTAAGCTATGATGCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGACATTCATTGGCACAGGTTCGAGATATATTGCATGCTCATTATGGTGAGTGCATGAAATATCATATTGGAGTGTTGGTTGAGAAATCTCTCATAAAGATAATTGACTGGTATAGTAAGGTGACTCTACATGACTTGATAGAGGACATGGGTAAAGAAATTGTGCGACGGGAATCACCGAAAAATCCTGGGAAACGCAGTAGGTTATGGTTCCATGGAGATATAATTCATGTTTTGGAAGAAGATATGGGAACTATGAAAATTGAAATCATATATTTGGATTTTCCAGTATATGATGAAGAGGAAGTAATAGTGAAATGGAGTGGAAAGGCATTTGCGAAGATGAAAAATCTCAAGACACTTATTATTAAACAAGGTTGTTTTTCCAGAGGTCCGAAACATCTTCCAAATAGTTTAAGAATACTGGAATGGTGGAGATATCCTTCACCGTGTTTACCGTCAGATTTTCATCCAAAGCAACTTGCCATATGCAAGATAATGGATAGTTGCTTTACGTCACCCGAGTTGGCCGGTTTAGTGAAAGCAAGTAAATTTGAGAATACGAGTGTTTTGAATTTTGATGATTGTGAATTTTTAACAGAGATACCTGATGTATCTGGTCTCCTAAAATTAAAAGAATTATCATTTAAGCGTTGTGAGAATTTAACTACAATTGATGATTCAGTTGGGAAGCTGGATAAACTTAGAATATTGGCTTGTGAGGGTTGCATAAAGCTTGGAGCTTTACCTCCCTTCAAGTTGACTTCTCTTGAAGAACTCTATCTTAACGAATGCTCGAGTCTTGAGAGTTTTCCAGAAATATTAGGAGAGATGAAAAATATAAAACATCTTGACTTGTTTCGAACTCCTATAAAAGAATTGCCATCTTCGTTTGAAAATCTTACTGGGCTTCGAGAATTAGTTGCGGTAGCTTGTGGAATTGTTCAGTTTCCAAGTAGCATTGTCAAAATGCGAGAACTGGTTTTGATTAGAGGTGAGGGATGGAATTTGGGTTCATTGCCAGAAGTGGGCTCAATGGTGTCTTCAAACTTAGAACTTCTCAAACTCGTGAAGTGCAACGTGTCAGATGAAATTCTTGCAATTGGTCTCACCTGGTTTGCTAATGTGAAAAATTTAGACCTATCATTTAATTGTTTCACAATTATTCCTGAATGCATCAAAGAATGTCACCTTTTAAGGTCACTTACGTTGGACTATTGCCGGAATCTTCGAGAAATTAGAAGGATTCCGCCAAACTTAAAATATTTTTCTGCAAGAAACTGCTATTCCTTGACATCCGAGTCTATAAGCAAGTTACTTGATCAGGTTTATTTTTTATTTATGTATTTGATTTGA	2718	0.3885	MAVPSSSSSSFAYDVFLSFRGTDTRYGFTGNLYKALSDAGIRTFIDDEDLQRGEEITPSLLKAIQDSRIAIIVLSANYASSSFCLNELSNIIDRVNNIEGRKVFPIFYKVDPSDVRHQRGSYGEALVNHEKKFNANKERFEDNRERLAKWRTALERVANLSGYHFKHGDEYEHKFIESVVKEVSKNIKRVPFPVADYPVGLESQVEEVKLLMDAESKDEVHMVGIHGIGGVGKTTLALAVYNSVAEYFEGLCFLQNVRENSNTHGLQHLQEILLREMFGEEKIKLASIPKGSLEIQRRLRENKVLLILDDVDELEQLQALGRPDWFGPGSRVIITTRDKQLLACHEVKKTYAVKELNEKDALELLRWKAFKTLEVDQKYNNVLNRALTYASGLPLALEVIGSNLFGKSIDKWESALNLYQRIPPRDIQKKLKVSYDALEEEEKSVFLDIACCFKGHSLAQVRDILHAHYGECMKYHIGVLVEKSLIKIIDWYSKVTLHDLIEDMGKEIVRRESPKNPGKRSRLWFHGDIIHVLEEDMGTMKIEIIYLDFPVYDEEEVIVKWSGKAFAKMKNLKTLIIKQGCFSRGPKHLPNSLRILEWWRYPSPCLPSDFHPKQLAICKIMDSCFTSPELAGLVKASKFENTSVLNFDDCEFLTEIPDVSGLLKLKELSFKRCENLTTIDDSVGKLDKLRILACEGCIKLGALPPFKLTSLEELYLNECSSLESFPEILGEMKNIKHLDLFRTPIKELPSSFENLTGLRELVAVACGIVQFPSSIVKMRELVLIRGEGWNLGSLPEVGSMVSSNLELLKLVKCNVSDEILAIGLTWFANVKNLDLSFNCFTIIPECIKECHLLRSLTLDYCRNLREIRRIPPNLKYFSARNCYSLTSESISKLLDQVYFLFMYLI	905

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4701g00049	905	Pfam	NB-ARC domain	203	437	IPR002182	GO:0043531
	Gabi4701g00049	905	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	189	449	IPR027417	-
	Gabi4701g00049	905	SMART	till_3	12	160	IPR000157	GO:0007165
	Gabi4701g00049	905	FunFam	Disease resistance protein (TIR-NBS-LRR class)	9	189	-	-
	Gabi4701g00049	905	Gene3D	-	6	187	IPR035897	-
	Gabi4701g00049	905	SUPERFAMILY	L domain-like	557	898	-	-
	Gabi4701g00049	905	Gene3D	Ribonuclease Inhibitor	557	720	IPR032675	-
	Gabi4701g00049	905	ProSiteProfiles	TIR domain profile.	11	187	IPR000157	GO:0007165
	Gabi4701g00049	905	SUPERFAMILY	"Winged helix" DNA-binding domain	426	534	IPR036390	-
	Gabi4701g00049	905	Gene3D	-	188	353	IPR027417	-
	Gabi4701g00049	905	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	871	IPR044974	GO:0006952
	Gabi4701g00049	905	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	163	IPR035897	-
	Gabi4701g00049	905	PRINTS	Disease resistance protein signature	298	312	-	-
	Gabi4701g00049	905	PRINTS	Disease resistance protein signature	706	722	-	-
	Gabi4701g00049	905	PRINTS	Disease resistance protein signature	222	237	-	-
	Gabi4701g00049	905	PRINTS	Disease resistance protein signature	390	404	-	-
	Gabi4701g00049	905	Gene3D	-	355	439	IPR042197	-
	Gabi4701g00049	905	Pfam	TIR domain	12	187	IPR000157	GO:0007165
	Gabi4701g00049	905	Gene3D	Ribonuclease Inhibitor	721	897	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4701g00049	Gabi-Chr4701	518006	521221	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4701g00049	8	781	WRKY Transcription Factor Family	AT4G12020	29.875	8.33e-73	260

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4701g00049	-		-	gmx:100780257	1085.48