Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4701g00044 ATGTCTTCTGCCGGCGGCGACGGCGGAAGCAGCGGTAGCGGTAGCGGGGAAGGCGGCGTTACCTCCGGCGAACCTCGTCAATACTTTTGCCACCAGTGCGACCGCACCGTCTCCATTTCCCCTTCCTCTTCCGATCTCCTCTGCCCCAATTGCAACGAAGGTTTCCTCGAGGAACTCGAAATCCCACTCACTAACCCTAACCCTAATCCTGTCAATCCCTTCTTCTCCTTCAACTCTGACTCTCCCGCCACTGGCGCCGCCACCTTTCCCCTCCTCTTCTCCGGCGCCGGAACTCCCGGTGCTGGTCAGCCGTTCGACGATCTGTCCACCTTATTCGGCAACCGAGCGTCGCCGCCCCCTCTCGGTGACGCTAACGCGTTCAACCCGTTCATGTTCCTGCAGAACTACGTCCAAACCCTAAGAGCAGGAGGCGCAAACGTCCAATTCGTGATCGAGAACTCCGGCGACCCTAACAGAACGTTCCAGTTTCCCGGAAACGTCAACCACGGCGATTACTTTTTCGGACCCGGCCTGGAGGAGCTGATCCAGCAGCTCGCGGAGAACGATCCGAACCGGCGAGGGACGCCACCGGCTTCAAAGTCTGCGGTGGAAGGTCTACCGGATATACCGGTGACGGAGGAGCTGCTAGCCTCAGATTCAGCATCAGCACAATGCGCGGTGTGCAAGGACACCTTCGGTCTCGGTGAGAATGCGAAACAGATGCCTTGTAAACACATTTACCATGCTGATTGTATATTGCCTTGGTTGGAAATGCACAATTCGTGTCCGGTTTGCCGGTACGAGTTGCCTACTGACGACAACGATTACGAGCAGAGAGCTTCTCGGGGCGGTGCTCCTAATGATAACTCACGGTGGATGAGGTTTAGGGTGCCTTTGACTGGGCAGTTTAATCAATTTGGTTCTTCTGTTGCCGGAACAAGTAATGTTGGGAATGCTGACAACAACAACAACAACAGCAGCAGCAACAACAACAATGATGGAAATAATAGTGGACAATCGAATCTTGAAAGTAGGGGGAATCAGAATCTTGAGTCGGAAACCAGACAAGAAGATCTCGACTGA 1083 0.5439 MSSAGGDGGSSGSGSGEGGVTSGEPRQYFCHQCDRTVSISPSSSDLLCPNCNEGFLEELEIPLTNPNPNPVNPFFSFNSDSPATGAATFPLLFSGAGTPGAGQPFDDLSTLFGNRASPPPLGDANAFNPFMFLQNYVQTLRAGGANVQFVIENSGDPNRTFQFPGNVNHGDYFFGPGLEELIQQLAENDPNRRGTPPASKSAVEGLPDIPVTEELLASDSASAQCAVCKDTFGLGENAKQMPCKHIYHADCILPWLEMHNSCPVCRYELPTDDNDYEQRASRGGAPNDNSRWMRFRVPLTGQFNQFGSSVAGTSNVGNADNNNNNSSSNNNNDGNNSGQSNLESRGNQNLESETRQEDLD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4701g00044 360 MobiDBLite consensus disorder prediction 306 349 - -
Gabi4701g00044 360 MobiDBLite consensus disorder prediction 1 20 - -
Gabi4701g00044 360 SUPERFAMILY RING/U-box 208 273 - -
Gabi4701g00044 360 FunFam E3 ubiquitin-protein ligase RING1-like 184 272 - -
Gabi4701g00044 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 272 IPR013083 -
Gabi4701g00044 360 CDD RING-H2_RNF126-like 224 266 - -
Gabi4701g00044 360 Pfam zinc-ribbon 27 59 IPR039525 GO:0061630
Gabi4701g00044 360 MobiDBLite consensus disorder prediction 306 360 - -
Gabi4701g00044 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 128 270 - -
Gabi4701g00044 360 SMART ring_2 225 265 IPR001841 -
Gabi4701g00044 360 ProSiteProfiles Zinc finger RING-type profile. 225 266 IPR001841 -
Gabi4701g00044 360 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4701g00044 360 Pfam Ring finger domain 224 266 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4701g00044 Gabi-Chr4701 447515 453419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4701g00044 164 278 C3H Transcription Factor Family AT5G01980 52.174 2.88e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4701g00044 K11982 - gmx:100818686 418.313