Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4701g00043 ATGTCTTCTGCCGGCGGCGACGGCGGAAGCAGCGGTAGCGGTAGCGGGGAAGGCGGCGTTACCTCCGGCGAACCTCGTCAATACTTTTGCCACCAGTGCGACCGCACCGTCTCCATTTCCCCTTCCTCTTCCGATCTCCTCTGCCCCAATTGCAACGAAGGTTTCCTCGAGGAACTCGAAATCCCACTCACTAACCCTAACCCTAATCCTGTCAATCCCTTCTTCTCCTTCAACTCTGACTCTCCCGCCACTGGCGCCGCCACCTTTCCCCTCCTCTTCTCCGGCGCCGGAACTCCCGGTGCTGCGTCGCCGCCCCCTCTCGGTGACGCTAACGCGTTCAACCCGTTCATGTTCCTGCAGAACTACGTCCAAACCCTAAGAGCAGGAGGCGCAAACGTCCAATTCGTGATCGAGAACTCCGGCGACCCTAACAGAACGTTCCAGTTTCCCGGAAACGTCAACCACGGCGATTACTTTTTCGGACCCGGCCTGGAGGAGCTGATCCAGCAGCTCGCGGAGAACGATCCGAACCGGCGAGGGACGCCACCGGCTTCAAAGTCTGCGGTGGAAGGTCTACCGGATATACCGGTGACGGAGGAGCTGCTAGCCTCAGATTCAGCATCAGCACAATGCGCGGTGTGCAAGGACACCTTCGGTCTCGGTGAGAATGCGAAACAGATGCCTTGTAAACACATTTACCATGCTGATTGTATATTGCCTTGGTTGGAAATGCACAATTCGTGTCCGGTTTGCCGGTACGAGTTGCCTACTGACGACAACGATTACGAGCAGAGAGCTTCTCGGGGCGGTGCTCCTAATGATAACTCACGGTGGATGAGGTTTAGGGTGCCTTTGACTGGGCAGTTTAATCAATTTGGTTCTTCTGTTGCCGGAACAAGTAATGTTGGGAATGCTGACAACAACAACAACAACAGCAGCAGCAACAACAACAATGATGGAAATAATAGTGGACAATCGAATCTTGAAAGTAGGGGGAATCAGAATCTTGAGTCGGAAACCAGACAAGAAGATCTCGACTGA 1041 0.5427 MSSAGGDGGSSGSGSGEGGVTSGEPRQYFCHQCDRTVSISPSSSDLLCPNCNEGFLEELEIPLTNPNPNPVNPFFSFNSDSPATGAATFPLLFSGAGTPGAASPPPLGDANAFNPFMFLQNYVQTLRAGGANVQFVIENSGDPNRTFQFPGNVNHGDYFFGPGLEELIQQLAENDPNRRGTPPASKSAVEGLPDIPVTEELLASDSASAQCAVCKDTFGLGENAKQMPCKHIYHADCILPWLEMHNSCPVCRYELPTDDNDYEQRASRGGAPNDNSRWMRFRVPLTGQFNQFGSSVAGTSNVGNADNNNNNSSSNNNNDGNNSGQSNLESRGNQNLESETRQEDLD 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4701g00043 346 MobiDBLite consensus disorder prediction 1 20 - -
Gabi4701g00043 346 Pfam Ring finger domain 210 252 IPR001841 -
Gabi4701g00043 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 256 - -
Gabi4701g00043 346 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Gabi4701g00043 346 Pfam zinc-ribbon 27 59 IPR039525 GO:0061630
Gabi4701g00043 346 MobiDBLite consensus disorder prediction 292 335 - -
Gabi4701g00043 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 258 IPR013083 -
Gabi4701g00043 346 SUPERFAMILY RING/U-box 194 259 - -
Gabi4701g00043 346 FunFam E3 ubiquitin-protein ligase RING1-like 170 258 - -
Gabi4701g00043 346 SMART ring_2 211 251 IPR001841 -
Gabi4701g00043 346 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4701g00043 346 CDD RING-H2_RNF126-like 210 252 - -
Gabi4701g00043 346 MobiDBLite consensus disorder prediction 292 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4701g00043 Gabi-Chr4701 447514 453419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4701g00043 150 264 C3H Transcription Factor Family AT5G01980 52.174 1.94e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4701g00043 K11982 - gmx:100818686 402.905