Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4701g00003 ATGTGGTGTTCCAGCACAGCGAGTGAGGAGGAGCCCAGTGAATCTTCTTCGTCGTCCTTTTCAACATCCTTGTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACCCGTGGCCTCATGCATCTTTTCCCCGACGATGCTCCTTCTTCTCTTCCCGTTGGACGGAAGCCCCTTGTGTGTGTTGTTGGTGTGCCAAATCACATGACCTATGCCGATTTCTGCCAGTTCTGTGGTTCATTTATTCATCATATCCTTGAGATGCGCATTGTCAGGATGGATGGGATGGAGGATCAGTACAGTGTTTTAATTCGTTTTGATGACCAAAACTCTACAGACAGTTTCTACAAGCACTACTCTGGCCACCGTTTCTCATCTCTCGAGGTTGAGGTTTGCCGTGTTCTTTTCACATTAGATGTGCAATACACTGGTTCAATTGAACATGCACAACCATCCAATGCTACTTCAACTGAACAGCCTACATGTCCCGTGTGCCTTGAGCGATTAGATCAAGACACGAGTGGAATCCTTACAACTATATGCAATCATTCTTTCCATTGTTCATGTATTTCGAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCAGAAAAATCTATATGTTTTGTTTGTCAAACAACTGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGAAGATATAAAGGAGGACATGCCATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTAGAAGTGGAAACAAAGCGTGTGTGGGACTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTGGTTGAGCTGAACTCTCACTGTGTGCATGCAGACAAGGGATGTGGAAGTTGCAGCTGTGAAGATAATGCCATGAACGAGACTATACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAATCAAAAATTATATTTTGAATCCTTATTACAAGAGGTAAAAGAAGAAACTGAAAGAAAAATTTCCAAAGCCGTTCAGAAGGCCTGCAGTCTTAAACAGCAGAAGATTCAGGCCAAGATTGACAGATGTAACAAAGAGAAGAAATTCCTGGATGAACTTAATGAGAATCTTGTAAAAAATGAGGAGATTTGGAAAGCAAAGATACTTGAGATCGAAGAGAAGGAGAAAAAGGCTTGGAAAACGACTGATGATAGAGTAACGGACCTGGAAAAGCAGCTTGGAGATCTCATGCTTTGTCTTGAGGGTGGGAAGATGGTAGAACAGCTGCCCGTGTCAAATGAAAACAAAGATGGGACTGTCTTTGACATTTCAAAAGAATCCTCATCAACTATTGGCTCCGAACTGGGAAGAAAAAGCTTAACAGAAGAATGA 1425 0.4189 MWCSSTASEEEPSESSSSSFSTSLFNFSSGNPRIEETRGLMHLFPDDAPSSLPVGRKPLVCVVGVPNHMTYADFCQFCGSFIHHILEMRIVRMDGMEDQYSVLIRFDDQNSTDSFYKHYSGHRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVHADKGCGSCSCEDNAMNETILNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEETERKISKAVQKACSLKQQKIQAKIDRCNKEKKFLDELNENLVKNEEIWKAKILEIEEKEKKAWKTTDDRVTDLEKQLGDLMLCLEGGKMVEQLPVSNENKDGTVFDISKESSSTIGSELGRKSLTEE 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4701g00003 474 SMART Zf_UBP_1 212 261 IPR001607 GO:0008270
Gabi4701g00003 474 Pfam Ring finger domain 161 202 IPR001841 -
Gabi4701g00003 474 Coils Coil 371 391 - -
Gabi4701g00003 474 MobiDBLite consensus disorder prediction 446 474 - -
Gabi4701g00003 474 MobiDBLite consensus disorder prediction 1 22 - -
Gabi4701g00003 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 203 IPR013083 -
Gabi4701g00003 474 Coils Coil 327 347 - -
Gabi4701g00003 474 SMART ring_2 162 201 IPR001841 -
Gabi4701g00003 474 Pfam BRCA1-associated protein 2 53 149 IPR011422 -
Gabi4701g00003 474 CDD RING-H2_BRAP2 160 203 IPR047243 -
Gabi4701g00003 474 PANTHER BRCA1-ASSOCIATED PROTEIN 6 461 - -
Gabi4701g00003 474 Pfam Zn-finger in ubiquitin-hydrolases and other protein 213 272 IPR001607 GO:0008270
Gabi4701g00003 474 SUPERFAMILY RING/U-box 178 277 - -
Gabi4701g00003 474 ProSiteProfiles Zinc finger RING-type profile. 162 202 IPR001841 -
Gabi4701g00003 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 284 IPR013083 -
Gabi4701g00003 474 MobiDBLite consensus disorder prediction 446 467 - -
Gabi4701g00003 474 ProSiteProfiles Zinc finger UBP-type profile. 196 289 IPR001607 GO:0008270
Gabi4701g00003 474 CDD RRM_BRAP2_like 60 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4701g00003 Gabi-Chr4701 44552 48219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4701g00003 158 202 C3H Transcription Factor Family AT1G72220 48.936 2.49e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4701g00003 K10632 - gmx:100794688 808.52