Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4701g00001 ATGGAGCAGAACCCGTGGGGGAAATGGTCTTCCGATTTGGAAACTGATGATCATGTCAATGAGTGTTTACGCCACACGAATAATCCTTTTGATGAAGAGTTCCTCAGAGATATTCTGCAACAGCCACAAGAGGCCACTGGTCCTGTTAATAACTCATCAATCAATATGTGTCAACATGTTGCACAAAAACCAACAACATATATACTGTCTTTTGATAAATCCACTGCATTGTTACCAAATGACAATGATTCTTGCTCTGTTTGGAAAGATGTTTCCCAATCTCAATTGGGAAATCACAACACAGATTCTTTGCCTTTGTCGTCATCAAAGGAAAATCCAGGAACCAAGAAGACTCGAAACGCTTCTGAGACACTAGATCACATAATGTCAGAGAGACAAAGGAGAAGGGAACTCACAAGGAAGTTCATAGCACTTTCAGCCACTATTCCTGGCTTGAAGAAGATGGACAAGGCCCATGTACTAAGAGAAGCTATCAATTATGTGAAACAACTTCAAGAACGTGTGAAAGAGCTAGAAGAAGATATTCAGAAGAACGGTCTAGAATCAGTGATAACCATAACAAGATCTTATCTCTATATTGAAGATGACACTGCTTTCAGTGAAACTAACACTGATGAATGCTATGGGCCCAACGAAGCACTTCCTGAAGTTGAAGCCAGAGTCATAGGGAAGGAAGTGTTGATCAAAATTCAGTGTGGGAAACAAAAGGGTATTCTGCTCAAAATATTGTCCCAGCTTGAAGGCCTTCATCTCTCAATATGCAGTAGCAATGTCTTGCCATTTGGGGATACTCTTGACATCACCATTATTGCTCAGATGGGTGACAAATACAGCTTGATAGTGAAGGATCTAGTGAAAAAACTGAGACTAGTGGCTATGCTGAAGTCATGTGAAGTAAGATAA 924 0.4037 MEQNPWGKWSSDLETDDHVNECLRHTNNPFDEEFLRDILQQPQEATGPVNNSSINMCQHVAQKPTTYILSFDKSTALLPNDNDSCSVWKDVSQSQLGNHNTDSLPLSSSKENPGTKKTRNASETLDHIMSERQRRRELTRKFIALSATIPGLKKMDKAHVLREAINYVKQLQERVKELEEDIQKNGLESVITITRSYLYIEDDTAFSETNTDECYGPNEALPEVEARVIGKEVLIKIQCGKQKGILLKILSQLEGLHLSICSSNVLPFGDTLDITIIAQMGDKYSLIVKDLVKKLRLVAMLKSCEVR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4701g00001 307 Coils Coil 161 188 - -
Gabi4701g00001 307 PANTHER BHLH TRANSCRIPTION FACTOR 12 300 - -
Gabi4701g00001 307 SMART finulus 128 177 IPR011598 GO:0046983
Gabi4701g00001 307 MobiDBLite consensus disorder prediction 96 123 - -
Gabi4701g00001 307 Pfam Helix-loop-helix DNA-binding domain 127 172 IPR011598 GO:0046983
Gabi4701g00001 307 Gene3D - 112 186 IPR036638 GO:0046983
Gabi4701g00001 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Gabi4701g00001 307 MobiDBLite consensus disorder prediction 96 115 - -
Gabi4701g00001 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 188 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4701g00001 Gabi-Chr4701 33189 43142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4701g00001 114 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.059 1.20e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4701g00001 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4701g00001 - - gmx:100809223 387.111