Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4700g00006 ATGTGCATAATGGGTTGCATGTGTTGCAAGCCCTCTGCCATTGAGGATAGTAAGGAGAGTCCAAGGGAGCGTTTATCAAGCAAGTCTGCTTTGGACTCTCGTGTGTCTAGGGGAACTTCATCAAGGAGGGAGGAATCATATAGGGTAAAGGATAGATATGATAACAATGATGGGAGAACTGCTTTGATTGATAAGCAAGGGAATGGCTCTGTTAGAGTGCAAGGTGATAATTTTGAAAGGAAGAGGGAGAAAATGGAATATGCTGTTGCTCTACATCCAGGGATTGGTAGTGTTCCCAAAGCCGTGGAAGGGGAGCAGGTTGCAGCTGGATGGCCCTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAAGGGATGGCTGCCGCGGCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGCCAGGGAACTTATAGTAATGTTTATAGAGCTCGTGATCTTGAACAAAAAAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGTAGGCTTGATCATCCAAATGTCATAAAACTGGAAGGCCTGGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCTTCACATCCTGGACTGAAGTTTACAGAAGCACAGGTTAAATGTTACATGCAGCAACTTTTATGCGGACTTGATCACTGCCACAGCTGTGGTGTACTGCACCGTGACATAAAGGGTTCCAATCTTTTGATTGACAACAATGGAATCTTGAAAATTGCAGACTTTGGTTTGGCAAGCTTTTTCGATCCCAAACAAATTCAGCCACTGACAAGCCGAGTTGTCACTCTTTGGTATAGGCCGCCAGAGCTCTTACTTGGAGCCACTTACTATGGCACTGCTGTAGATTTATGGAGTACAGGTTGCATACTTGCTGAACTGTATGCTGGCAAGCCTATAATGCCTGGAAGAACTGAGGTGGAGCAGTTACATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAAGACTATTGGAGAAAATCAAAGTTGCCTCATGCAACAATATTTAAGCCTCAACAGCCATATAGGCGTTGTGTTGCTGAAACATTCAAGGACTTTCCTGCACCTGCAATAGAACTGATAGAGACCCTTTTGTCCATAGATCCTGCTGATCGAGGAAGTGCAGCATCTGCTTTGAAGAGTGAGTTCTTCTCAACAAAGCCTCTACCTTGTGATCCTTCAAGCTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAAGTACGAGATGAAGAAGCCAGAAGACAAGGAGCAGCAGGAAGCAAGGGCCAGAGACACGACCTTGAGAGAAGAGGAGCAAGAGAATCGCGAGCCATTCCTGCACCTGATGCCAATGCTGAACTGGTCTTGTCGATGCAGAAGAGACAAGGGCAAGCTAATTCTCAAAGCAGGAGTGAGAAATTTAACCCTCATCCTGAAGAAGCTGCTTCTGGATTTCCCATTGATCCCCCAAGACCATCACAAACTGTAGAAGTAAGTGCGGATCCCCAGGTACTTCAACATAAAAGAGCCTCCCATTCAGGTCCACTGACTCACCGTGCTGCATGGGCTAAAGCCGGGAAGAACCAGGACGACGCTCCAAAGATTTCAATGGGGGGTGACTTATCAACAATCTCGGGCTTAGTTGCAGCCAGGAGGAGTATGTTGTCTGACGATCGCAGAGAAAGATCTGGATCTTCACAAGCAGAGGCTCCAAAACTAATAAGCAGGTTCCCAGGATCCTTCAAGGAGGCCTCTGAATCGATGATGCAACAGGATCAGAAGCATCATGCACATGCTCCTCAGAAGGAAGAAGGGAGAGGCAGCAACAAAGACCCCAATCTTGTTGGTTATGGGTCAAAGGGTCATAAAATTCATTATTCTGGTCCATTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAAGACCATGACCGCCAAATTCAAGAGGCAGTTAGAAGAGCACGTTTGGACAAGGCAAAAATGAGAAGACTCCAAGCTGAGGGGAACCAGATAACCAATTCATTATTTGTTTCTGGTCGTTGA 2133 0.4552 MCIMGCMCCKPSAIEDSKESPRERLSSKSALDSRVSRGTSSRREESYRVKDRYDNNDGRTALIDKQGNGSVRVQGDNFERKREKMEYAVALHPGIGSVPKAVEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLCGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPKQIQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPAPAIELIETLLSIDPADRGSAASALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGAAGSKGQRHDLERRGARESRAIPAPDANAELVLSMQKRQGQANSQSRSEKFNPHPEEAASGFPIDPPRPSQTVEVSADPQVLQHKRASHSGPLTHRAAWAKAGKNQDDAPKISMGGDLSTISGLVAARRSMLSDDRRERSGSSQAEAPKLISRFPGSFKEASESMMQQDQKHHAHAPQKEEGRGSNKDPNLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRARLDKAKMRRLQAEGNQITNSLFVSGR 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4700g00006 710 CDD STKc_CDK9_like 134 418 - -
Gabi4700g00006 710 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Gabi4700g00006 710 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4700g00006 710 FunFam probable serine/threonine-protein kinase At1g54610 121 216 - -
Gabi4700g00006 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Gabi4700g00006 710 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4700g00006 710 SUPERFAMILY Protein kinase-like (PK-like) 128 426 IPR011009 -
Gabi4700g00006 710 Gene3D Transferase(Phosphotransferase) domain 1 217 457 - -
Gabi4700g00006 710 MobiDBLite consensus disorder prediction 424 569 - -
Gabi4700g00006 710 Coils Coil 677 697 - -
Gabi4700g00006 710 MobiDBLite consensus disorder prediction 17 47 - -
Gabi4700g00006 710 MobiDBLite consensus disorder prediction 617 638 - -
Gabi4700g00006 710 MobiDBLite consensus disorder prediction 437 472 - -
Gabi4700g00006 710 FunFam probable serine/threonine-protein kinase At1g54610 217 458 - -
Gabi4700g00006 710 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Gabi4700g00006 710 PANTHER CELL DIVISION PROTEIN KINASE 132 424 - -
Gabi4700g00006 710 MobiDBLite consensus disorder prediction 486 501 - -
Gabi4700g00006 710 MobiDBLite consensus disorder prediction 582 647 - -
Gabi4700g00006 710 Pfam Protein kinase domain 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4700g00006 Gabi-Chr4700 67164 79009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4700g00006 126 475 Core Cell Cycle Gene Families AT5G10270 52.459 3.30e-120 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi4700g00006 Pkinase 1.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4700g00006 - - gmx:100792173 1344.72