Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4694g00097 ATGATGCACCAAGGACCTGGTATGGCTCCACCCAGCATGGGGCAGCAACAGTACCAGCAGCCACAGCATCAGCAACAACCCTACGTCATGATGCCACCGCAGCCTCAGGCGCCGCCGCCCATGTGGGCCCCCTCCGCCCAGGCTCCGCCTCAATCCTCTCATCCCGCCAGCGCCGATGAGATCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGACGAGAACTACCTCTATACCTGCTTTGCTCACAGCGGCGAGGTGACCTCTGTGAAAGTTATTAGGAATAAGCAAACTAGTCAGTCGGAAGGTTATGGGTTTATTGAGTTTAGTAGTCGTGCTGGTGCTGAGAGAGTGCTTCAAACATATAATGGAGCCATTATGCCAAATGGTGGGATGAATTTCAGATTGAATTGGGCAACTTTCAGTGCCGGTGAGAGACGTCATGATGATAGTCCTGATCACACCATATTTGTTGGTGACTTGGCTGCGGATGTTACTGATTACCTCCTTCAGGAGACATTTAGGTCTCGTTATAACTCAGTGAAGGGAGCAAAAGTTGTGATTGATAGGGGCACTGGCCGGACTAAGGGTTATGGTTTTGTGAGATTTGCAGATGAAAGTGAGCAACTGCGGGCTATGACTGAGATGCAGGGGGTCCTTTGTTCAACAAGACCCATGAGGATTGGACCAGCCACTAATAAAAACCTTGGCACTCAGCCAAAAGCTTCATATCAGAATCCTCAAGGCTCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTGACTGATGATCACTTAAGGCAAGTTTTCAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGGAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAACTGTGCAGAAGAGGCACTGCGGATTTTAAATGGAACACTGTTGGGTGGACAAAACGTTCGTCTTTCATGGGGACGCAGTCCTTCAAACAAACAGGGAGATACGAACCAGTGGAATGGCGGTGGTGGTGGTGGTGGTGGATATTATGGATATGCTCAAGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAGGATCCTAATATGTATGGCAGTTATCCGGGTTATGCGAGTTACCAACCACAGCAGCAACAGCAGCAAATAGGATTTAGTTAA 1191 0.4794 MMHQGPGMAPPSMGQQQYQQPQHQQQPYVMMPPQPQAPPPMWAPSAQAPPQSSHPASADEIRTLWIGDLQYWMDENYLYTCFAHSGEVTSVKVIRNKQTSQSEGYGFIEFSSRAGAERVLQTYNGAIMPNGGMNFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRSRYNSVKGAKVVIDRGTGRTKGYGFVRFADESEQLRAMTEMQGVLCSTRPMRIGPATNKNLGTQPKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRNCAEEALRILNGTLLGGQNVRLSWGRSPSNKQGDTNQWNGGGGGGGGYYGYAQGYENYGYAPAGQDPNMYGSYPGYASYQPQQQQQQIGFS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4694g00097 396 MobiDBLite consensus disorder prediction 31 46 - -
Gabi4694g00097 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 234 IPR000504 GO:0003723
Gabi4694g00097 396 SUPERFAMILY RNA-binding domain, RBD 244 362 IPR035979 GO:0003676
Gabi4694g00097 396 SMART rrm1_1 63 138 IPR000504 GO:0003723
Gabi4694g00097 396 SMART rrm1_1 261 328 IPR000504 GO:0003723
Gabi4694g00097 396 SMART rrm1_1 156 230 IPR000504 GO:0003723
Gabi4694g00097 396 FunFam Polyadenylate-binding protein RBP45C 239 367 - -
Gabi4694g00097 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 332 IPR000504 GO:0003723
Gabi4694g00097 396 MobiDBLite consensus disorder prediction 1 56 - -
Gabi4694g00097 396 FunFam Polyadenylate-binding protein RBP45C 147 238 - -
Gabi4694g00097 396 MobiDBLite consensus disorder prediction 226 261 - -
Gabi4694g00097 396 SUPERFAMILY RNA-binding domain, RBD 61 235 IPR035979 GO:0003676
Gabi4694g00097 396 MobiDBLite consensus disorder prediction 10 30 - -
Gabi4694g00097 396 Gene3D - 241 366 IPR012677 -
Gabi4694g00097 396 MobiDBLite consensus disorder prediction 229 261 - -
Gabi4694g00097 396 FunFam Polyadenylate-binding protein RBP45 6 146 - -
Gabi4694g00097 396 CDD RRM2_SECp43_like 154 233 - -
Gabi4694g00097 396 CDD RRM1_SECp43_like 63 143 - -
Gabi4694g00097 396 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 53 336 - -
Gabi4694g00097 396 Gene3D - 146 240 IPR012677 -
Gabi4694g00097 396 Gene3D - 8 145 IPR012677 -
Gabi4694g00097 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 142 IPR000504 GO:0003723
Gabi4694g00097 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 325 IPR000504 GO:0003723
Gabi4694g00097 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 129 IPR000504 GO:0003723
Gabi4694g00097 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 220 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4694g00097 Gabi-Chr4694 825919 829738 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4694g00097 156 343 Eukaryotic Initiation Factors Gene Family AT4G34110 29.648 1.79e-15 76.3