Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4694g00096 ATGATGCACCAAGGACCTGGTATGGCTCCACCCAGCATGGGGCAGCAACAGTACCAGCAGCCACAGCATCAGCAACAACCCTACGTCATGATGCCACCGCAGCCTCAGGCGCCGCCGCCCATGTGGGCCCCCTCCGCCCAGGCTCCGCCTCAATCCTCTCATCCCGCCAGCGCCGATGAGATCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGACGAGAACTACCTCTATACCTGCTTTGCTCACAGCGGCGAGGTGACCTCTGTGAAAGTTATTAGGAATAAGCAAACTAGTCAGTCGGAAGGTTATGGGTTTATTGAGTTTAGTAGTCGTGCTGGTGCTGAGAGAGTGCTTCAAACATATAATGGAGCCATTATGCCAAATGGTGGGATGAATTTCAGATTGAATTGGGCAACTTTCAGTGCCGGTGAGAGACGTCATGATGATAGTCCTGATCACACCATATTTGTTGGTGACTTGGCTGCGGATGTTACTGATTACCTCCTTCAGGAGACATTTAGGTCTCGTTATAACTCAGTGAAGGGAGCAAAAGTTGTGATTGATAGGGGCACTGGCCGGACTAAGGGTTATGGTTTTGTGAGATTTGCAGATGAAAGTGAGCAACTGCGGGCTATGACTGAGATGCAGGGGGTCCTTTGTTCAACAAGACCCATGAGGATTGGACCAGCCACTAATAAAAACCTTGGCACTCAGCCAAAAGCTTCATATCAGAATCCTCAAGGCTCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTGACTGATGATCACTTAAGGCAAGTTTTCAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGGAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAACTGTGCAGAAGAGGCACTGCGGATTTTAAATGGAACACTGTTGGGTGGACAAAACGTTCGTCTTTCATGGGGACGCAGTCCTTCAAACAAACAGGCTCAGGGAGATACGAACCAGTGGAATGGCGGTGGTGGTGGTGGTGGTGGATATTATGGATATGCTCAAGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAGGATCCTAATATGTATGGCAGTTATCCGGGTTATGCGAGTTACCAACCACAGCAGCAACAGCAGCAAATAGGATTTAGTTAA 1197 0.4804 MMHQGPGMAPPSMGQQQYQQPQHQQQPYVMMPPQPQAPPPMWAPSAQAPPQSSHPASADEIRTLWIGDLQYWMDENYLYTCFAHSGEVTSVKVIRNKQTSQSEGYGFIEFSSRAGAERVLQTYNGAIMPNGGMNFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRSRYNSVKGAKVVIDRGTGRTKGYGFVRFADESEQLRAMTEMQGVLCSTRPMRIGPATNKNLGTQPKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRNCAEEALRILNGTLLGGQNVRLSWGRSPSNKQAQGDTNQWNGGGGGGGGYYGYAQGYENYGYAPAGQDPNMYGSYPGYASYQPQQQQQQIGFS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4694g00096 398 Gene3D - 240 368 IPR012677 -
Gabi4694g00096 398 MobiDBLite consensus disorder prediction 31 46 - -
Gabi4694g00096 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 234 IPR000504 GO:0003723
Gabi4694g00096 398 SUPERFAMILY RNA-binding domain, RBD 61 237 IPR035979 GO:0003676
Gabi4694g00096 398 SMART rrm1_1 63 138 IPR000504 GO:0003723
Gabi4694g00096 398 SMART rrm1_1 156 230 IPR000504 GO:0003723
Gabi4694g00096 398 SMART rrm1_1 261 328 IPR000504 GO:0003723
Gabi4694g00096 398 SUPERFAMILY RNA-binding domain, RBD 244 359 IPR035979 GO:0003676
Gabi4694g00096 398 FunFam Polyadenylate-binding protein RBP45C 239 369 - -
Gabi4694g00096 398 FunFam Polyadenylate-binding protein RBP45C 147 238 - -
Gabi4694g00096 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 332 IPR000504 GO:0003723
Gabi4694g00096 398 FunFam Polyadenylate-binding protein RBP45 6 146 - -
Gabi4694g00096 398 MobiDBLite consensus disorder prediction 1 56 - -
Gabi4694g00096 398 MobiDBLite consensus disorder prediction 226 261 - -
Gabi4694g00096 398 Gene3D - 146 239 IPR012677 -
Gabi4694g00096 398 MobiDBLite consensus disorder prediction 10 30 - -
Gabi4694g00096 398 MobiDBLite consensus disorder prediction 330 349 - -
Gabi4694g00096 398 MobiDBLite consensus disorder prediction 229 261 - -
Gabi4694g00096 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 325 IPR000504 GO:0003723
Gabi4694g00096 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 129 IPR000504 GO:0003723
Gabi4694g00096 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 220 IPR000504 GO:0003723
Gabi4694g00096 398 CDD RRM1_SECp43_like 63 143 - -
Gabi4694g00096 398 CDD RRM2_SECp43_like 154 233 - -
Gabi4694g00096 398 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 53 336 - -
Gabi4694g00096 398 Gene3D - 8 145 IPR012677 -
Gabi4694g00096 398 MobiDBLite consensus disorder prediction 330 346 - -
Gabi4694g00096 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 142 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4694g00096 Gabi-Chr4694 825919 829738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4694g00096 64 339 Eukaryotic Initiation Factors Gene Family AT4G34110 26.132 2.62e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4694g00096 - - aprc:113864230 620.542