Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4694g00079 ATGGCAAATTTGACATCCTTATCTTCATGTTCCCCTCCTCCGTCTGTGTCACGCATTCCATCCTTTTCAGCTTCATCGTCTTCTGCAGCTTTCGACGACTCTTCTGAGGACTCCTGCAGTATATGTCTAGAGCCCTTCGGCATCCATGACCCATCCACTGTTACCTGTTGCAAACATGAATATCACCTGCATTGCATTCTTGAGTGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAAAGCTTGAGATCAAGAAACATATATTCATCTTCATTCACTAATTCTCGCATCCCCCTTGAACGGCTTATTGATGACAATGATGATTCTTGCTCAGATGACTCTGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCAAGTAGAGCTCGTTTTGTTCAGAGACGGGAAAGGCAGAGATCATCTGGAGCGGGTCCATCAGAGGTTCTTGTTTTTGAATCTTCTGCGCATGTGTCCACGGTGCAACGAACACTTACAACTTCACCATCTGGTGGTAGTTCACCAACTTCTGGCATACCATCTGCAGTTGACATTCAACCTCCAACATCTGCTTTTTCCCCTATTGTGGATGAGGTTGCAAGAAATACTAGTCCTGAGAGTGATGTCCCCTACAGACCCAGAGTTCTCTATCCCCAGCCACCGCCTGAGAGTGTGAGGAGACTTAACACTTCTGAGATGTTCTCCCTTCCTGAATCCTTCAAAACCAAATTTTCTGCTGCTTCAGCCAGATATAGGGAATCAATTTCAAAAAGTACCCGAGGCCTTAAAGAGAAACTACTTGCACGTAATGCCTCAGTAAAAGAGCTGAGCAAAGGTGTTCAGCGTGAGATGAATGCAGGCATAGCTGGAGTTGCACGGATGATAGAACGCCTTGACCTTACCTCAAAACGGTCCAGTTCACCTCTCATTCCTGTCCATACTGGGGGAACTTCGGGCTTCCCTGAAGAAGGAAAGTTTGTCGAAGAGAATGGCATTGGGCATTCTCCTAATGAAGAGAATGGAGATTTGGTTCATGATGTTAGTTCAGATGCTCCCTCACTTGTTTCTAGCATGGTTGGTGGTCGAATGGAAATTCCTCAATTTGTTCAGAGTGGGCATGATGCTGTGAAGATTTAG 1203 0.4572 MANLTSLSSCSPPPSVSRIPSFSASSSSAAFDDSSEDSCSICLEPFGIHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKSLRSRNIYSSSFTNSRIPLERLIDDNDDSCSDDSDFDEQIMQHLVAAASRARFVQRRERQRSSGAGPSEVLVFESSAHVSTVQRTLTTSPSGGSSPTSGIPSAVDIQPPTSAFSPIVDEVARNTSPESDVPYRPRVLYPQPPPESVRRLNTSEMFSLPESFKTKFSAASARYRESISKSTRGLKEKLLARNASVKELSKGVQREMNAGIAGVARMIERLDLTSKRSSSPLIPVHTGGTSGFPEEGKFVEENGIGHSPNEENGDLVHDVSSDAPSLVSSMVGGRMEIPQFVQSGHDAVKI 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4694g00079 400 MobiDBLite consensus disorder prediction 223 246 - -
Gabi4694g00079 400 FunFam E3 ubiquitin-protein ligase RHF1A 24 91 - -
Gabi4694g00079 400 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 26 88 - -
Gabi4694g00079 400 SMART ring_2 39 79 IPR001841 -
Gabi4694g00079 400 MobiDBLite consensus disorder prediction 183 210 - -
Gabi4694g00079 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 110 IPR013083 -
Gabi4694g00079 400 Pfam Ring finger domain 37 79 IPR001841 -
Gabi4694g00079 400 SUPERFAMILY RING/U-box 32 86 - -
Gabi4694g00079 400 ProSiteProfiles Zinc finger RING-type profile. 39 79 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4694g00079 Gabi-Chr4694 716141 719619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4694g00079 18 87 C3H Transcription Factor Family AT4G00335 40.000 6.81e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4694g00079 K19043 - gmx:100805449 459.914