Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4694g00078 ATGGCAAATTTGACATCCTTATCTTCATCTTTCGACGACTCTTCTGAGGACTCCTGCAGTATATGTCTAGAGCCCTTCGGCATCCATGACCCATCCACTGTTACCTGTTGCAAACATGAATATCACCTGCATTGCATTCTTGAGTGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAAAGCTTGAGATCAAGAAACATATATTCATCTTCATTCACTAATTCTCGCATCCCCCTTGAACGGCTTATTGATGACAATGATGATTCTTGCTCAGATGACTCTGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCAAGTAGAGCTCGTTTTGTTCAGAGACGGGAAAGGCAGAGATCATCTGGAGCGGGTCCATCAGAGGTTCTTGTTTTTGAATCTTCTGCGCATGTGTCCACGGTGCAACGAACACTTACAACTTCACCATCTGGTGGTAGTTCACCAACTTCTGGCATACCATCTGCAGTTGACATTCAACCTCCAACATCTGCTTTTTCCCCTATTGTGGATGAGGTTGCAAGAAATACTAGTCCTGAGAGTGATGTCCCCTACAGACCCAGAGTTCTCTATCCCCAGCCACCGCCTGAGAGTGTGAGGAGACTTAACACTTCTGAGATGTTCTCCCTTCCTGAATCCTTCAAAACCAAATTTTCTGCTGCTTCAGCCAGATATAGGGAATCAATTTCAAAAAGTACCCGAGGCCTTAAAGAGAAACTACTTGCACGTAATGCCTCAGTAAAAGAGCTGAGCAAAGGTGTTCAGCGTGAGATGAATGCAGGCATAGCTGGAGTTGCACGGATGATAGAACGCCTTGACCTTACCTCAAAACGGTCCAGTTCACCTCTCATTCCTGTCCATACTGGGGGAACTTCGGGCTTCCCTGAAGAAGGAAAGTTTGTCGAAGAGAATGGCATTGGGCATTCTCCTAATGAAGAGAATGGAGATTTGGTTCATGATGTTAGTTCAGATGCTCCCTCACTTGTTTCTAGCATGGTTGGTGGTCGAATGGAAATTCCTCAATTTGTTCAGAGTGGGCATGATGCTGTGAAGATTTAG 1143 0.4532 MANLTSLSSSFDDSSEDSCSICLEPFGIHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKSLRSRNIYSSSFTNSRIPLERLIDDNDDSCSDDSDFDEQIMQHLVAAASRARFVQRRERQRSSGAGPSEVLVFESSAHVSTVQRTLTTSPSGGSSPTSGIPSAVDIQPPTSAFSPIVDEVARNTSPESDVPYRPRVLYPQPPPESVRRLNTSEMFSLPESFKTKFSAASARYRESISKSTRGLKEKLLARNASVKELSKGVQREMNAGIAGVARMIERLDLTSKRSSSPLIPVHTGGTSGFPEEGKFVEENGIGHSPNEENGDLVHDVSSDAPSLVSSMVGGRMEIPQFVQSGHDAVKI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4694g00078 380 MobiDBLite consensus disorder prediction 163 190 - -
Gabi4694g00078 380 FunFam E3 ubiquitin-protein ligase RHF1A 4 71 - -
Gabi4694g00078 380 ProSiteProfiles Zinc finger RING-type profile. 19 59 IPR001841 -
Gabi4694g00078 380 MobiDBLite consensus disorder prediction 203 226 - -
Gabi4694g00078 380 Pfam Ring finger domain 17 59 IPR001841 -
Gabi4694g00078 380 SUPERFAMILY RING/U-box 11 66 - -
Gabi4694g00078 380 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 13 68 - -
Gabi4694g00078 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 90 IPR013083 -
Gabi4694g00078 380 SMART ring_2 19 59 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4694g00078 Gabi-Chr4694 716141 719619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4694g00078 13 67 C3H Transcription Factor Family AT4G00335 45.455 1.79e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4694g00078 K19043 - gmx:100805449 456.832