Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4694g00049 ATGGGTATTTCGTGGAGTAGTAGTAGAAGAAGAAACAATTTCATTCAGAACCCACCTCCACCACCGGCACTGCCACCTCCTTACTATTATTCTTCAGCATCTCATCCTCCTCCTCCTCCGCCGCCGCCGCCGCCTCCTCAGCCGCAAGGTTACTTTTTTCCGTCAACAACACCTTACACCCCACACTCAACTAGCTATGTCACTCCCCCTGCTTTGCCACCACCACCTCCTCCTCAGAACCATTCATTCTATTACACCAATCCCAATGGGTACAACAACTATACCAACTCTATGATGGGTGGCCTTCATTGCCACCCTTTCTATGTGAATCAGAATCATGGTGGTGGGTGGGGTGCAGTTCGTCCTTCTGCTGCCACTGCATCATCCACCCCACCTCCTTATGTTGATCATCAAACTGCTAAGAAGATCAGGAACTATGTCAATGTTCATAAAGACACCTTGCGGCTTGAGATTGATGAGCACAACCCTGATCACCACCTCGTTTCATTCGTTTTTGATGCTCTCTATGATGGCAGCATTAGTATCTACTACTTTGCCAAGGAAGAAGAAAAATGTAGGTTTGTTCCTCTATTTCCTGATGCATTTCAGCCAGTCAGAATCCCCTTTCAGAAAGGAGCTGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGGATTGACTTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGTCCTCACCTAGTGAAGATGTCTTTCCTCTTGTAATATGTGCTGAAACATGTTTGAGAACTCCCTCATCAGATGACACTCCTGATGATTCCATGCTAGATGCATCCCCTCACATGCAAATAACTCAAGGTGTCTTAGAGAAAAGCAATGGTGGTGGTCCTTTCCAGATTAAAGTAGTTAGGCAGATTCTTTGGATTGATGGTGTTCGATATGAGTTGAGAGAGTTATATGGTATAGGAAGCTCAGCAGCAACCGATTTTGATGACAATGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACTGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCTAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAAGGTTAACAATGGTGATCAATGA 1164 0.4502 MGISWSSSRRRNNFIQNPPPPPALPPPYYYSSASHPPPPPPPPPPPQPQGYFFPSTTPYTPHSTSYVTPPALPPPPPPQNHSFYYTNPNGYNNYTNSMMGGLHCHPFYVNQNHGGGWGAVRPSAATASSTPPPYVDHQTAKKIRNYVNVHKDTLRLEIDEHNPDHHLVSFVFDALYDGSISIYYFAKEEEKCRFVPLFPDAFQPVRIPFQKGAGQKFAQPSGTGIDLGFFELDDLSKSSPSEDVFPLVICAETCLRTPSSDDTPDDSMLDASPHMQITQGVLEKSNGGGPFQIKVVRQILWIDGVRYELRELYGIGSSAATDFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKVNNGDQ 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4694g00049 387 CDD mRING-HC-C3HC5_MGRN1-like 330 371 IPR045195 -
Gabi4694g00049 387 SUPERFAMILY RING/U-box 331 377 - -
Gabi4694g00049 387 MobiDBLite consensus disorder prediction 67 82 - -
Gabi4694g00049 387 MobiDBLite consensus disorder prediction 1 84 - -
Gabi4694g00049 387 SMART ring_2 332 370 IPR001841 -
Gabi4694g00049 387 MobiDBLite consensus disorder prediction 15 52 - -
Gabi4694g00049 387 ProSiteProfiles Zinc finger RING-type profile. 332 371 IPR001841 -
Gabi4694g00049 387 PANTHER MAHOGUNIN 52 382 IPR045194 GO:0061630
Gabi4694g00049 387 FunFam probable E3 ubiquitin-protein ligase LOG2 316 381 - -
Gabi4694g00049 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 381 IPR013083 -
Gabi4694g00049 387 Pfam Zinc finger, C3HC4 type (RING finger) 330 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4694g00049 Gabi-Chr4694 464472 477106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4694g00049 134 387 C3H Transcription Factor Family AT3G06140 63.137 1.17e-110 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4694g00049 - - gsj:114373285 517.309