Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4694g00018 ATGGCTTCCATTGCTTTCAGAAACCCAAATTCTAAGCACCTTCTTCTCTCTTTCCATTTCATATCTGCTTATCGTTCGGTCTCTCGCGGAATTTGCACCATTTCCCAAAGCTTCCCCCTCTACAGTAATGCACTTCCATGGGGTCTTGTTTCTCTGCGGAGATCAATGGCTACTTTCACTCGAACAAAGCCTCACCTTAATGTGGGCACCATTGGGCATGTCGATCATGGGAAAACCACACTAACTGCTGCAATTACAAAGGTGCTATCTGAAGAAGGTAAAGCCAAGGCCATTGCCTTTGAAGAAATAGACAAGGCTCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGCTCATGTAGAGTATGAAACAGCAAAGAGGCATTATGCTCATGTTGACTGCCCGGGACATGCGGACTATGTTAAGAACATGATAACTGGAGCAGCGCAAATGGATGGTGGAATTCTTGTGGTTTCTGCTCCAGATGGGCCAATGCCTCAAACAAAGGAACATATACTGCTTGCTCGTCAGGTTGGTGTGCCATCATTGGTCTGCTTTCTAAATAAGGTTGATGCTGTTGATGACCCAGAGCTACTTGAACTTGTGGAAATGGAACTTCGTGAGCTGCTTAATTTCTACAAATTTCCAGGGGATGAGATACCTATTGTACGAGGTTCAGCCCTATCTGCCTTGCAAGGGACTAATGAAGAACTTGGAAAGAAGGCTATCTTAAAACTAATGGAAGCTGTGGATGAATACATTTCTGATCCTGTGAGGCAGCTTGACAAGCCTTTCTTAATGCCAATAGAAGATGTTTTCTCAATTCAGGGGCGTGGAACTGTTGTGACTGGTCGTGTTGAACAAGGCACCATCAAAGTTGGAGAGGAAGTTGAAGTATTGGGACTAACACAGGATGGACCTTTGAAAACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCATGGCCAAGCTGGTGATAATGTTGGACTTCTTCTACGTGGTCTGAAGCGTGATGATGTACAGCGGGGAATGGTTGTCACCAAGCCTGGTGCATTGAAAACGTATAAGAAGTTTGAAGCAGAGATTTATGTGCTCTCGAAAGATGAAGGTGGTCGTCATACTGCTTTCTTTTCTAATTACAGGCCTCAGTTTTACATGAGGACTGCAGATATTACCGGAAAGGTGGAATTACCTGAAAATGTTAAGATGGTTATGCCTGGTGATAACGTGACGGCAACTTTTGAGCTGATATCACCAGTTCCTCTTGAACCAGGACAAAGATTTGCTTTGAGAGAGGGAGGCAGAACAGTTGGTGCAGGAGTGGTCTCCAAAGTAATTGCCTAG 1356 0.4403 MASIAFRNPNSKHLLLSFHFISAYRSVSRGICTISQSFPLYSNALPWGLVSLRRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLSEEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMEAVDEYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKVGEEVEVLGLTQDGPLKTTVTGVEMFKKILDHGQAGDNVGLLLRGLKRDDVQRGMVVTKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYRPQFYMRTADITGKVELPENVKMVMPGDNVTATFELISPVPLEPGQRFALREGGRTVGAGVVSKVIA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4694g00018 451 Hamap Elongation factor Tu [tuf]. 54 451 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gabi4694g00018 451 NCBIfam elongation factor Tu 55 450 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gabi4694g00018 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 281 IPR027417 -
Gabi4694g00018 451 NCBIfam small GTP-binding protein domain 67 204 IPR005225 GO:0005525
Gabi4694g00018 451 FunFam Elongation factor Tu 261 391 - -
Gabi4694g00018 451 CDD EF_Tu 64 258 IPR041709 -
Gabi4694g00018 451 PRINTS GTP-binding elongation factor signature 67 80 IPR000795 GO:0003924|GO:0005525
Gabi4694g00018 451 PRINTS GTP-binding elongation factor signature 131 141 IPR000795 GO:0003924|GO:0005525
Gabi4694g00018 451 PRINTS GTP-binding elongation factor signature 111 119 IPR000795 GO:0003924|GO:0005525
Gabi4694g00018 451 PRINTS GTP-binding elongation factor signature 147 158 IPR000795 GO:0003924|GO:0005525
Gabi4694g00018 451 PRINTS GTP-binding elongation factor signature 184 193 IPR000795 GO:0003924|GO:0005525
Gabi4694g00018 451 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 104 119 IPR031157 -
Gabi4694g00018 451 Pfam Elongation factor Tu GTP binding domain 63 256 IPR000795 GO:0003924|GO:0005525
Gabi4694g00018 451 CDD EFTU_II 266 354 IPR033720 -
Gabi4694g00018 451 Gene3D Translation factors 261 391 - -
Gabi4694g00018 451 CDD EFTU_III 357 446 - -
Gabi4694g00018 451 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 63 259 IPR000795 GO:0003924|GO:0005525
Gabi4694g00018 451 Gene3D Translation factors 395 450 - -
Gabi4694g00018 451 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 360 451 IPR009001 -
Gabi4694g00018 451 SUPERFAMILY Translation proteins 260 356 IPR009000 -
Gabi4694g00018 451 PANTHER ELONGATION FACTOR TU-RELATED 57 450 - -
Gabi4694g00018 451 Pfam Elongation factor Tu C-terminal domain 356 449 IPR004160 -
Gabi4694g00018 451 FunFam Elongation factor Tu 54 258 - -
Gabi4694g00018 451 Gene3D - 55 258 IPR027417 -
Gabi4694g00018 451 Pfam Elongation factor Tu domain 2 280 351 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4694g00018 Gabi-Chr4694 143471 147181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4694g00018 61 449 Eukaryotic Initiation Factors Gene Family AT5G60390 30.805 3.38e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4694g00018 K02358 - gmx:102667962 785.408