Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4692g00003 ATGGATTACCGGTCACCGCCGACGATGAATATCTGGACCGACGACAACTCCTCCGTGATGGAGGCTTTCATGAGCTCCTCCTCCGACCTTTCCTCCCTCTGGCTAACCCCGTCCGCTACATCCACCACAACTCCGGGACCCGACCCGATCAGAGCCCCGCCGCCGCCGTTTCCGGCGCAATCGCAGCCTCTATTCAACCAAGAGACCCTACAGCAGCGTCTGCAGGCGCTGATCGAGGGCGCCAGGGAGAGCTGGACCTACGCCATCTTCTGGCAATATTCCTACGATTATTCCTCCGGCGCCTCCTTACTCGGCTGGGGCGACGGCTATTACAAAGGCGAGGAGGACAAAGGAAAAGGCAAACTCCCCAAAGCGACGTCGTCTTCTGAGCAGGACCACCGCAAGAAGGTCCTCCGCGAACTGAATTCCCTGATCTCCGGCTCTTCCACCTCCGTCGACTATGCCGTGGACGAAGAGGTAACCGACACCGAGTGGTTTTTCCTCGTGTCGATGACTCAGTCATTTGTTAACGGAAGCGGCCTGCCGGGCCAGGCTTTCTTTAATTCAAACCCAATCTGGGTCGCAGGGGCGGACCGGTTATCCGGTTCGGCCTGCGAGCGAGCCAGACAGGGCCAGGTGTTCGGGCTTCAGACCTTGGTTTGCATACCATCAGCTAACGGCGTCGTAGAGCTTGCGTCCACGGAAGTGATTTCCCAGAACACTGATTTGATGAACAAGGTGCGTGTTTTGTTCAACTTCAACAACCTCCCCGACGTGGGTTCATGGCCGTTGAATTCTGTTACAGCCGATCAAGGCGAGAACGACCCTTCCTCGCTCTGGCTCAACGATTCCTCTGGCGGGATCGAAATTAGGGATTCCGTTAATACCGTTACGCCTGCTTCGGCTAATACAACGATTGACAAGACCTTGCAGTTTGAAACCCCTGGTTCCAGTACTCTAACCGAAACTCCTAGTGTTGTTATTGTTACCAACAACACTAACAGTCACCAGCAACGCCAGCAATCGATAAACCATGGCTTCTTCTCGAGGGAACTGAACTTTTCAAGTTCCATGAAGCCAGAAACCGGCGAGATTCTTAGCTTCGGGGATAGCAAGAAGACCTCTTACAGCGCCAACGGGAATTTCTTTTCCGGTCAGTCGTCCCCGTTCGTTGCCTCCGAGGAGAACAAGAAAAGGAGGTCCCCTACTTCCAGGAGTAGCGTTGACGATGGAATTCTCTCCTTCACTTCTGGTGTGATCTTGCCGGCATCGAATATAAAATCTGGTGGTGGCGGCGGCGGCGGCGGGGACGGTGATTCCGACCATTCAGATCTAGAAGCTTCTGTGGTGAAGGAGGACGATAGCAGCAGAGTGGTGGAACCGGAGAAACGACCCCGGAAGAGAGGGCGCAAGCCGGCAAATGGCAGAGAGGAGCCGTTGAATCATGTTGAAGCGGAGAGGCAGAGGAGAGAAAAGCTGAATCAGAAGTTCTATGCTCTTCGTGCGGTGGTTCCTAATGTTTCAAAGATGGACAAGGCGTCCCTTCTTGGCGATGCTATATCTTACATCAACGAGTTGAAATCGAAGCTTCAAGGGCTGGAATCAGAAAAAGGTACATTCGAGAAGCAATTGGATTCCGCAAAGAAGGAACTTGAGCTGGCAAGTAAAAATCCACCACCACCACCACCACCAGATAAAGAAGTGAAGAACTGCAAGCTGATTGATTTGGAAATAGACGTGAAGATTATAGGTTGGGATGCGATGATTAGAATCCAATGCAGCAAGAAGAATCACCCTGCGGCAAGATTGATGGCGGCTTTGAAGGAGCTGGACTTGGATGTGCACCATGCCAGCGTGTCCGTAGTGAATGATTTAATGATCCAACAAGCGACGGTGAACATGGGAAATCAGTATTATACTCAGGAGCAGCTCCTGTTAGCGTTATCATCCAAAGTTGGCGATGCACGATGA 1971 0.5251 MDYRSPPTMNIWTDDNSSVMEAFMSSSSDLSSLWLTPSATSTTTPGPDPIRAPPPPFPAQSQPLFNQETLQQRLQALIEGARESWTYAIFWQYSYDYSSGASLLGWGDGYYKGEEDKGKGKLPKATSSSEQDHRKKVLRELNSLISGSSTSVDYAVDEEVTDTEWFFLVSMTQSFVNGSGLPGQAFFNSNPIWVAGADRLSGSACERARQGQVFGLQTLVCIPSANGVVELASTEVISQNTDLMNKVRVLFNFNNLPDVGSWPLNSVTADQGENDPSSLWLNDSSGGIEIRDSVNTVTPASANTTIDKTLQFETPGSSTLTETPSVVIVTNNTNSHQQRQQSINHGFFSRELNFSSSMKPETGEILSFGDSKKTSYSANGNFFSGQSSPFVASEENKKRRSPTSRSSVDDGILSFTSGVILPASNIKSGGGGGGGGDGDSDHSDLEASVVKEDDSSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESEKGTFEKQLDSAKKELELASKNPPPPPPPDKEVKNCKLIDLEIDVKIIGWDAMIRIQCSKKNHPAARLMAALKELDLDVHHASVSVVNDLMIQQATVNMGNQYYTQEQLLLALSSKVGDAR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4692g00003 656 MobiDBLite consensus disorder prediction 439 487 - -
Gabi4692g00003 656 FunFam Transcription factor bHLH13 470 544 - -
Gabi4692g00003 656 Gene3D - 469 556 IPR036638 GO:0046983
Gabi4692g00003 656 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 480 545 IPR036638 GO:0046983
Gabi4692g00003 656 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 70 251 IPR025610 -
Gabi4692g00003 656 SMART finulus 483 532 IPR011598 GO:0046983
Gabi4692g00003 656 MobiDBLite consensus disorder prediction 35 62 - -
Gabi4692g00003 656 MobiDBLite consensus disorder prediction 423 487 - -
Gabi4692g00003 656 MobiDBLite consensus disorder prediction 47 61 - -
Gabi4692g00003 656 CDD bHLH_AtAIB_like 474 550 - -
Gabi4692g00003 656 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 477 526 IPR011598 GO:0046983
Gabi4692g00003 656 Coils Coil 523 557 - -
Gabi4692g00003 656 MobiDBLite consensus disorder prediction 380 410 - -
Gabi4692g00003 656 Pfam Helix-loop-helix DNA-binding domain 481 526 IPR011598 GO:0046983
Gabi4692g00003 656 PANTHER MYC 20 650 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4692g00003 Gabi-Chr4692 34211 36811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4692g00003 2 653 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.822 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4692g00003 bHLH-MYC_N 1.6e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4692g00003 K13422 - gmx:100790854 860.907