Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4692g00002 ATGGATTACCGGTCACCGCCGACGATGAATATCTGGACCGACGACAACTCCTCCGTGATGGAGGCTTTCATGAGCTCCTCCTCCGACCTTTCCTCCCTCTGGCTAACCCCGTCCGCTACATCCACCACAACTCCGGGACCCGACCCGATCAGAGCCCCGCCGCCGCCGTTTCCGGCGCAATCGCAGCCTCTATTCAACCAAGAGACCCTACAGCAGCGTCTGCAGGCGCTGATCGAGGGCGCCAGGGAGAGCTGGACCTACGCCATCTTCTGGCAATATTCCTACGATTATTCCTCCGGCGCCTCCTTACTCGGCTGGGGCGACGGCTATTACAAAGGCGAGGAGGACAAAGGAAAAGGCAAACTCCCCAAAGCGACGTCGTCTTCTGAGCAGGACCACCGCAAGAAGGTCCTCCGCGAACTGAATTCCCTGATCTCCGGCTCTTCCACCTCCGTCGACTATGCCGTGGACGAAGAGGTAACCGACACCGAGTGGTTTTTCCTCGTGTCGATGACTCAGTCATTTGTTAACGGAAGCGGCCTGCCGGGCCAGGCTTTCTTTAATTCAAACCCAATCTGGGTCGCAGGGGCGGACCGGTTATCCGGTTCGGCCTGCGAGCGAGCCAGACAGGGCCAGGTGTTCGGGCTTCAGACCTTGGTTTGCATACCATCAGCTAACGGCGTCGTAGAGCTTGCGTCCACGGAAGTGATTTCCCAGAACACTGATTTGATGAACAAGGTGCGTGTTTTGTTCAACTTCAACAACCTCCCCGACGTGGGTTCATGGCCGTTGAATTCTGTTACAGCCGATCAAGGCGAGAACGACCCTTCCTCGCTCTGGCTCAACGATTCTTCCAGTACTCTAACCGAAACTCCTAGTGTTGTTATTGTTACCAACAACACTAACAGTCACCAGCAACGCCAGCAATCGATAAACCATGGCTTCTTCTCGAGGGAACTGAACTTTTCAAGTTCCATGAAGCCAGAAACCGGCGAGATTCTTAGCTTCGGGGATAGCAAGAAGACCTCTTACAGCGCCAACGGGAATTTCTTTTCCGGTCAGTCGTCCCCGTTCGTTGCCTCCGAGGAGAACAAGAAAAGGAGGTCCCCTACTTCCAGGAGTAGCGTTGACGATGGAATTCTCTCCTTCACTTCTGGTGTGATCTTGCCGGCATCGAATATAAAATCTGGTGGTGGCGGCGGCGGCGGCGGGGACGGTGATTCCGACCATTCAGATCTAGAAGCTTCTGTGGTGAAGGAGGACGATAGCAGCAGAGTGGTGGAACCGGAGAAACGACCCCGGAAGAGAGGGCGCAAGCCGGCAAATGGCAGAGAGGAGCCGTTGAATCATGTTGAAGCGGAGAGGCAGAGGAGAGAAAAGCTGAATCAGAAGTTCTATGCTCTTCGTGCGGTGGTTCCTAATGTTTCAAAGATGGACAAGGCGTCCCTTCTTGGCGATGCTATATCTTACATCAACGAGTTGAAATCGAAGCTTCAAGGGCTGGAATCAGAAAAAGGTACATTCGAGAAGCAATTGGATTCCGCAAAGAAGGAACTTGAGCTGGCAAGTAAAAATCCACCACCACCACCACCACCAGATAAAGAAGTGAAGAACTGCAAGCTGATTGATTTGGAAATAGACGTGAAGATTATAGGTTGGGATGCGATGATTAGAATCCAATGCAGCAAGAAGAATCACCCTGCGGCAAGATTGATGGCGGCTTTGAAGGAGCTGGACTTGGATGTGCACCATGCCAGCGTGTCCGTAGTGAATGATTTAATGATCCAACAAGCGACGGTGAACATGGGAAATCAGTATTATACTCAGGAGCAGCTCCTGTTAGCGTTATCATCCAAAGTTGGCGATGCACGATGA 1875 0.5269 MDYRSPPTMNIWTDDNSSVMEAFMSSSSDLSSLWLTPSATSTTTPGPDPIRAPPPPFPAQSQPLFNQETLQQRLQALIEGARESWTYAIFWQYSYDYSSGASLLGWGDGYYKGEEDKGKGKLPKATSSSEQDHRKKVLRELNSLISGSSTSVDYAVDEEVTDTEWFFLVSMTQSFVNGSGLPGQAFFNSNPIWVAGADRLSGSACERARQGQVFGLQTLVCIPSANGVVELASTEVISQNTDLMNKVRVLFNFNNLPDVGSWPLNSVTADQGENDPSSLWLNDSSSTLTETPSVVIVTNNTNSHQQRQQSINHGFFSRELNFSSSMKPETGEILSFGDSKKTSYSANGNFFSGQSSPFVASEENKKRRSPTSRSSVDDGILSFTSGVILPASNIKSGGGGGGGGDGDSDHSDLEASVVKEDDSSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESEKGTFEKQLDSAKKELELASKNPPPPPPPDKEVKNCKLIDLEIDVKIIGWDAMIRIQCSKKNHPAARLMAALKELDLDVHHASVSVVNDLMIQQATVNMGNQYYTQEQLLLALSSKVGDAR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4692g00002 624 MobiDBLite consensus disorder prediction 407 455 - -
Gabi4692g00002 624 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 448 513 IPR036638 GO:0046983
Gabi4692g00002 624 Gene3D - 437 524 IPR036638 GO:0046983
Gabi4692g00002 624 FunFam Transcription factor bHLH13 438 512 - -
Gabi4692g00002 624 MobiDBLite consensus disorder prediction 35 62 - -
Gabi4692g00002 624 Pfam Helix-loop-helix DNA-binding domain 449 494 IPR011598 GO:0046983
Gabi4692g00002 624 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 70 251 IPR025610 -
Gabi4692g00002 624 SMART finulus 451 500 IPR011598 GO:0046983
Gabi4692g00002 624 MobiDBLite consensus disorder prediction 391 455 - -
Gabi4692g00002 624 MobiDBLite consensus disorder prediction 47 61 - -
Gabi4692g00002 624 CDD bHLH_AtAIB_like 442 518 - -
Gabi4692g00002 624 Coils Coil 491 525 - -
Gabi4692g00002 624 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 445 494 IPR011598 GO:0046983
Gabi4692g00002 624 MobiDBLite consensus disorder prediction 348 378 - -
Gabi4692g00002 624 PANTHER MYC 20 618 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4692g00002 Gabi-Chr4692 34211 36811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4692g00002 2 621 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.856 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4692g00002 bHLH-MYC_N 1.4e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4692g00002 K13422 - gmx:100790854 823.157