Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4692g00001 ATGGATTACCGGTCACCGCCGACGATGAATATCTGGACCGACGACAACTCCTCCGTGATGGAGGCTTTCATGAGCTCCTCCTCCGACCTTTCCTCCCTCTGGCTAACCCCAGCCCCGCCGCCGCCGTTTCCGGCGCAATCGCAGCCTCTATTCAACCAAGAGACCCTACAGCAGCGTCTGCAGGCGCTGATCGAGGGCGCCAGGGAGAGCTGGACCTACGCCATCTTCTGGCAATATTCCTACGATTATTCCTCCGGCGCCTCCTTACTCGGCTGGGGCGACGGCTATTACAAAGGCGAGGAGGACAAAGGAAAAGGCAAACTCCCCAAAGCGACGTCGTCTTCTGAGCAGGACCACCGCAAGAAGGTCCTCCGCGAACTGAATTCCCTGATCTCCGGCTCTTCCACCTCCGTCGACTATGCCGTGGACGAAGAGGTAACCGACACCGAGTGGTTTTTCCTCGTGTCGATGACTCAGTCATTTGTTAACGGAAGCGGCCTGCCGGGCCAGGCTTTCTTTAATTCAAACCCAATCTGGGTCGCAGGGGCGGACCGGTTATCCGGTTCGGCCTGCGAGCGAGCCAGACAGGGCCAGGTGTTCGGGCTTCAGACCTTGGTTTGCATACCATCAGCTAACGGCGTCGTAGAGCTTGCGTCCACGGAAGTGATTTCCCAGAACACTGATTTGATGAACAAGGTGCGTGTTTTGTTCAACTTCAACAACCTCCCCGACGTGGGTTCATGGCCGTTGAATTCTGTTACAGCCGATCAAGGCGAGAACGACCCTTCCTCGCTCTGGCTCAACGATTCCTCTGGCGGGATCGAAATTAGGGATTCCGTTAATACCGTTACGCCTGCTTCGGCTAATACAACGATTGACAAGACCTTGCAGTTTGAAACCCCTGGTTCCAGTACTCTAACCGAAACTCCTAGTGTTGTTATTGTTACCAACAACACTAACAGTCACCAGCAACGCCAGCAATCGATAAACCATGGCTTCTTCTCGAGGGAACTGAACTTTTCAAGTTCCATGAAGCCAGAAACCGGCGAGATTCTTAGCTTCGGGGATAGCAAGAAGACCTCTTACAGCGCCAACGGGAATTTCTTTTCCGGTCAGTCGTCCCCGTTCGTTGCCTCCGAGGAGAACAAGAAAAGGAGGTCCCCTACTTCCAGGAGTAGCGTTGACGATGGAATTCTCTCCTTCACTTCTGGTGTGATCTTGCCGGCATCGAATATAAAATCTGGTGGTGGCGGCGGCGGCGGCGGGGACGGTGATTCCGACCATTCAGATCTAGAAGCTTCTGTGGTGAAGGAGGACGATAGCAGCAGAGTGGTGGAACCGGAGAAACGACCCCGGAAGAGAGGGCGCAAGCCGGCAAATGGCAGAGAGGAGCCGTTGAATCATGTTGAAGCGGAGAGGCAGAGGAGAGAAAAGCTGAATCAGAAGTTCTATGCTCTTCGTGCGGTGGTTCCTAATGTTTCAAAGATGGACAAGGCGTCCCTTCTTGGCGATGCTATATCTTACATCAACGAGTTGAAATCGAAGCTTCAAGGGCTGGAATCAGAAAAAGGTACATTCGAGAAGCAATTGGATTCCGCAAAGAAGGAACTTGAGCTGGCAAGTAAAAATCCACCACCACCACCACCACCAGATAAAGAAGTGAAGAACTGCAAGCTGATTGATTTGGAAATAGACGTGAAGATTATAGGTTGGGATGCGATGATTAGAATCCAATGCAGCAAGAAGAATCACCCTGCGGCAAGATTGATGGCGGCTTTGAAGGAGCTGGACTTGGATGTGCACCATGCCAGCGTGTCCGTAGTGAATGATTTAATGATCCAACAAGCGACGGTGAACATGGGAAATCAGTATTATACTCAGGAGCAGCTCCTGTTAGCGTTATCATCCAAAGTTGGCGATGCACGATGA 1929 0.5226 MDYRSPPTMNIWTDDNSSVMEAFMSSSSDLSSLWLTPAPPPPFPAQSQPLFNQETLQQRLQALIEGARESWTYAIFWQYSYDYSSGASLLGWGDGYYKGEEDKGKGKLPKATSSSEQDHRKKVLRELNSLISGSSTSVDYAVDEEVTDTEWFFLVSMTQSFVNGSGLPGQAFFNSNPIWVAGADRLSGSACERARQGQVFGLQTLVCIPSANGVVELASTEVISQNTDLMNKVRVLFNFNNLPDVGSWPLNSVTADQGENDPSSLWLNDSSGGIEIRDSVNTVTPASANTTIDKTLQFETPGSSTLTETPSVVIVTNNTNSHQQRQQSINHGFFSRELNFSSSMKPETGEILSFGDSKKTSYSANGNFFSGQSSPFVASEENKKRRSPTSRSSVDDGILSFTSGVILPASNIKSGGGGGGGGDGDSDHSDLEASVVKEDDSSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESEKGTFEKQLDSAKKELELASKNPPPPPPPDKEVKNCKLIDLEIDVKIIGWDAMIRIQCSKKNHPAARLMAALKELDLDVHHASVSVVNDLMIQQATVNMGNQYYTQEQLLLALSSKVGDAR 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4692g00001 642 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 463 512 IPR011598 GO:0046983
Gabi4692g00001 642 SMART finulus 469 518 IPR011598 GO:0046983
Gabi4692g00001 642 MobiDBLite consensus disorder prediction 409 473 - -
Gabi4692g00001 642 PANTHER MYC 20 636 IPR045084 GO:0003700|GO:0006355
Gabi4692g00001 642 Pfam Helix-loop-helix DNA-binding domain 467 512 IPR011598 GO:0046983
Gabi4692g00001 642 CDD bHLH_AtAIB_like 460 536 - -
Gabi4692g00001 642 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 56 237 IPR025610 -
Gabi4692g00001 642 Coils Coil 509 543 - -
Gabi4692g00001 642 Gene3D - 455 542 IPR036638 GO:0046983
Gabi4692g00001 642 MobiDBLite consensus disorder prediction 366 396 - -
Gabi4692g00001 642 MobiDBLite consensus disorder prediction 425 473 - -
Gabi4692g00001 642 FunFam Transcription factor bHLH13 456 530 - -
Gabi4692g00001 642 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 466 531 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4692g00001 Gabi-Chr4692 34211 36811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4692g00001 2 639 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.156 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4692g00001 bHLH-MYC_N 1.5e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4692g00001 K13422 - gmx:100790854 855.514