Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4690g00008 ATGGATCTTGAGACAAAGCTCAGAGAAAACTATGCCTCACACCCAATGCATTTACAAGAAAGCTACTTGAAACCCAGCATGAAAGATGAGCTTCCTTTTGGATTTCCTTCATGTCAGGGATCCTTGCAAGATTTTCACCATATTAACCAGTTTAATATGAATGGTTTCTCATCCAATCCAGTTTTAGGGGTTCAAACTCCAAATTTTGATCCATTTGATAATTCTACCTTTCTTCGTTCACCAGCAGGTTTCGATGTTTATGAGTGCAAACCTTCTGTGGAGAATAATAGTAGTGGTGGGCATGCTCATGTTATGGACAATTTCCTATATGGAGGTTATAGTTTGAACCTCCCACAGAGGAATCAAGTGGATATGATGGTTGCAAACCAAGGTTATTTGCCCTTCAATCCTCAAGAAACCAAGCCCGTGAATTTTGTTGTACCAGATGAAGTTTCATGCATATCCCCAATGAATTATTACAAAAAAGTTGGCGTGAACAAAAGTAATAGGGCATATCCAACCACTAGAAGGACATACAAAGTTCGTAAGAAGTCCAACATAGTAAAGGGACAATGGACAGTAGAAGAAGATGGGTTGTTGATTCAACTGGTCGAACAATATGGATTAAGGAAGTGGTCTCATATTGCTCAGATATTGCGTGGAAGAATAGGAAAACAGTGTAGAGAGAGATGGCATAACCATCTAAGGCCTGACATTAAGAAGGACACGTGGACTGATGAAGAGGATAAGATATTGATCCAAGCTCATTCAGAGATAGGAAATAAATGGGCTGAAATTGCAAAAAGATTGCCAGGAAGAACTGAGAACTCAATCAAAAACCACTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAGTGTCACTCAAAGTACCCTAGAAGCTCTCTTCTGCAAGATTATATCAAAAGCTTGAACTTAGACAAAAACCCACCATTAGACTATCGGAGAAGGTCTTCTGCTAATGCTAGTTCCATGAAGAACAAAACTAGCACAAGCAAAGTTGCAGCACTAGCTCATCCCCAGATAGCAGATTGCTCTGTACCAAATTATGATTTTAATGAGATCCCAGATTTTTCCTTCGATAAGAGTTTGTTTGAAGAAGGGTGTAGTGTTGATTCTCTGCTAGATGAATTGGATGAGAAGGACTTTGAAGGAAAAATGAAATGTGCTCCTAGTATGGAAGGAAAACATTCTGACCAGGGAGGAATGTATTATTCTCCTGTTGTGAATTTTGATGACAACCTGCCACTGGAGATTATGGCACCCATGCTGGGGGTTGAAGTTAAGAAGGAGCTAGATTTGGTGGAGATGATGTCTCAGGTCAACCAAATCGTTGATGTTTAA 1368 0.3962 MDLETKLRENYASHPMHLQESYLKPSMKDELPFGFPSCQGSLQDFHHINQFNMNGFSSNPVLGVQTPNFDPFDNSTFLRSPAGFDVYECKPSVENNSSGGHAHVMDNFLYGGYSLNLPQRNQVDMMVANQGYLPFNPQETKPVNFVVPDEVSCISPMNYYKKVGVNKSNRAYPTTRRTYKVRKKSNIVKGQWTVEEDGLLIQLVEQYGLRKWSHIAQILRGRIGKQCRERWHNHLRPDIKKDTWTDEEDKILIQAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCHSKYPRSSLLQDYIKSLNLDKNPPLDYRRRSSANASSMKNKTSTSKVAALAHPQIADCSVPNYDFNEIPDFSFDKSLFEEGCSVDSLLDELDEKDFEGKMKCAPSMEGKHSDQGGMYYSPVVNFDDNLPLEIMAPMLGVEVKKELDLVEMMSQVNQIVDV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4690g00008 455 ProSiteProfiles Myb-like domain profile. 236 286 IPR001005 -
Gabi4690g00008 455 SMART sant 240 288 IPR001005 -
Gabi4690g00008 455 SMART sant 188 237 IPR001005 -
Gabi4690g00008 455 CDD SANT 243 286 IPR001005 -
Gabi4690g00008 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 290 IPR017930 -
Gabi4690g00008 455 PANTHER MYB PROTEIN-RELATED 167 335 - -
Gabi4690g00008 455 Gene3D - 242 307 - -
Gabi4690g00008 455 FunFam Transcriptional activator Myb isoform A 188 241 - -
Gabi4690g00008 455 CDD SANT 192 235 IPR001005 -
Gabi4690g00008 455 SUPERFAMILY Homeodomain-like 186 282 IPR009057 -
Gabi4690g00008 455 FunFam Transcription factor MYB119 242 306 - -
Gabi4690g00008 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 239 IPR017930 -
Gabi4690g00008 455 Gene3D - 188 240 - -
Gabi4690g00008 455 MobiDBLite consensus disorder prediction 316 336 - -
Gabi4690g00008 455 Pfam Myb-like DNA-binding domain 192 246 - -
Gabi4690g00008 455 ProSiteProfiles Myb-like domain profile. 184 235 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4690g00008 Gabi-Chr4690 45659 48414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4690g00008 60 393 MYB Transcription Factor Family AT4G18770 49.036 6.48e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4690g00008 Myb_DNA-bind_6 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4690g00008 K09422 - gmx:100816653 633.639