Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi468g00001 ATGCCATCCCGGCAACTCCTCCAATCTCCGCCGTCCACGGCGTTCTTATCCAACACATACCCACCACCACCACCACCAACACCACAAACACAACCTCCTCACACCCATCACCACCGCCACCACCACCTCCTGACCCCTCTCATCGCCGCCACCGCTTCCGCCTTCTCCCTCCTCCTCCTCGCCTTCATCTGCCACCGCACCCTCACTCGAAAACGCACCACCCCATTCTCCTCCTCCGACACCGACTCCAAGCCACCCCACCGCTTCTCCTACGCCCTCCTCCGCCGCGCCACTAACTCCTTCTCCTCCCGCCTTGGCCACGGCGGCTTCGGCACCGTCTTCGCCGGCACTCTCCCGCCGCCGGCACGCAAACCCATCGCCGTCAAGCTCATGGACTCAACCTCCCACCAAGGCGAGCGCGAGTTCCACAACGAGCTTTTCTTCGCGTCGAGGCTCCGCTCCCTCCACGTCGTCGCCGCCGTCGGGTTCTCCTCCGACCCAAAACGCCGGCGATTCCTCCTCGTCTACGAGCTCATGCACAACGGGAACCTCCAAGACGCGCTCTTGCACCGAAAAAGCCCCGAGCTTTTGGATTGGAAGAAGCGCTTCGCTATTGTGTTGGACATTGCAAGAGGAGTTCAGTACCTTCACTCTTGCGACCCTCCCATTATTCATGGAGACATAAAACCCAGTAACATTTTGTTGGATCGAAATTTCTCTGCTAAAATCGGGGATTTTGGGCTTGCCCGGTTGAAATCGGAGCCGCTCCAGTTTGAAATTGAGGTTTTGGATGATGATAGTATTGCTGATGATGATGATGAGGAGAAGAAGAAGAAGAAGAAGAAGGAGGAAGAATTGGAGTGTGATGTTGGTGGGGTTGTGTTTGATGATTGTGGCTCAATTGAGAGTGTGCATACTGTTTTCTTTGATTCGGGTAGCTTGGGTGTGGAGCAATCTCCTCCACAATTGGAAAAGTCACCAGAATCTATTGTGGCGGCAGTGGCTTCGCCGGAGACGGCTTTGGCGACGGTGGCTTCATCACCGGGTTTTGATAAGTTTAGTGTGCAAAGTGAGAAGGATGTTGTTGGGGGTGTTAAGAAGAGTGGTAAAGGGCTAAGGAGTAATTCAGTGAGGGAATTATGGTGGATGCAAGACAATGATGAGGTTGCTGCCTCTGCTTCAGCTTCAACACCAACAGTTAGTGAAAGTAAGAAGGTGAAGGAATATGTGATGGAGTGGATTGGAAGGGAAGTGAATAAGGAAAGTCCAAAGAGTGAATGGGTTGGAGCAAAGATTATGGAGACAGAGAAGAAGAAGAGCAAGAAGCACCAATTGGAATGGTGGGAGTCAATGGATGAGTTAAAGGTTGGTGGGGTTGTGAAGAAGGAGAAGAGAAGGCCTGCGAGGGAATGGTGGAAGGAGAACAGTGAAGAGATTGCAAAGAAGAAGAAAAAGAAGAAGAAGAATAAGAAGAGTGTAAACAATGATGACAATGGTGATGATTGGTGGGTTAGTGATGATGCATTATATGGGGATAAAATTATGACCAAGAGCAGAAGCAGGAACAACCGTGGTAATATGGATTGGTGGTTAGATGGTCTCAGTGGTCAGTTATGGAGAGCTCGGAGGAATAGCTTTGATTCTGCTAGTGGTGAAATTCCAAAGAGTGGTGGTGTGAGTAGTACTCCTAGTATGAGAGGAACTGTATGTTATGTTGCTCCTGAATATGGCTGTGGTGAAGATGTCTCAGAGAAGTGTGATGTATATAGCTTTGGGGTCTTGTTGCTTGTTATCATTTCTGGGAGGCGACCACTTCAGGTGAATGGTTCACCAATGTCAGAGTTTCAGCGAGCAAATCTTTTGTCATGGACACGCCATTGTGCTAGAAATGGGAAGCTCATTGAGCTTGTTGATCAGTCTATTCAGTCATTGGATAAAGAGCAGGCTCTTCTCTGCATCAAGGTGGCTTTGCTTTGTTTGCTTAAGTCACCTGCTCGTCGTCCTTCATTGATGGAGGTTGTGGGAATGCTTAGTGGAGAATTGGAACCACCCCAATTGCCTGTTGAGTACTCACCTTCAACCCCTTCTCGCTTCCCTTTCAAGTCTAGGAAAAAAGGCCGGTGA 2124 0.5 MPSRQLLQSPPSTAFLSNTYPPPPPPTPQTQPPHTHHHRHHHLLTPLIAATASAFSLLLLAFICHRTLTRKRTTPFSSSDTDSKPPHRFSYALLRRATNSFSSRLGHGGFGTVFAGTLPPPARKPIAVKLMDSTSHQGEREFHNELFFASRLRSLHVVAAVGFSSDPKRRRFLLVYELMHNGNLQDALLHRKSPELLDWKKRFAIVLDIARGVQYLHSCDPPIIHGDIKPSNILLDRNFSAKIGDFGLARLKSEPLQFEIEVLDDDSIADDDDEEKKKKKKKEEELECDVGGVVFDDCGSIESVHTVFFDSGSLGVEQSPPQLEKSPESIVAAVASPETALATVASSPGFDKFSVQSEKDVVGGVKKSGKGLRSNSVRELWWMQDNDEVAASASASTPTVSESKKVKEYVMEWIGREVNKESPKSEWVGAKIMETEKKKSKKHQLEWWESMDELKVGGVVKKEKRRPAREWWKENSEEIAKKKKKKKKNKKSVNNDDNGDDWWVSDDALYGDKIMTKSRSRNNRGNMDWWLDGLSGQLWRARRNSFDSASGEIPKSGGVSSTPSMRGTVCYVAPEYGCGEDVSEKCDVYSFGVLLLVIISGRRPLQVNGSPMSEFQRANLLSWTRHCARNGKLIELVDQSIQSLDKEQALLCIKVALLCLLKSPARRPSLMEVVGMLSGELEPPQLPVEYSPSTPSRFPFKSRKKGR 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi468g00001 707 MobiDBLite consensus disorder prediction 465 497 - -
Gabi468g00001 707 MobiDBLite consensus disorder prediction 1 15 - -
Gabi468g00001 707 FunFam Os07g0541700 protein 179 260 - -
Gabi468g00001 707 Pfam Protein tyrosine and serine/threonine kinase 101 252 IPR001245 GO:0004672|GO:0006468
Gabi468g00001 707 SMART serkin_6 99 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi468g00001 707 Coils Coil 269 289 - -
Gabi468g00001 707 ProSiteProfiles Protein kinase domain profile. 99 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi468g00001 707 Gene3D Phosphorylase Kinase; domain 1 74 178 - -
Gabi468g00001 707 Gene3D Transferase(Phosphotransferase) domain 1 179 280 - -
Gabi468g00001 707 Gene3D Transferase(Phosphotransferase) domain 1 541 684 - -
Gabi468g00001 707 MobiDBLite consensus disorder prediction 1 41 - -
Gabi468g00001 707 MobiDBLite consensus disorder prediction 683 707 - -
Gabi468g00001 707 ProSitePatterns Protein kinases ATP-binding region signature. 105 129 IPR017441 GO:0005524
Gabi468g00001 707 SUPERFAMILY Protein kinase-like (PK-like) 76 695 IPR011009 -
Gabi468g00001 707 MobiDBLite consensus disorder prediction 16 32 - -
Gabi468g00001 707 PANTHER OS07G0586332 PROTEIN 22 706 IPR044576 -
Gabi468g00001 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Gabi468g00001 707 MobiDBLite consensus disorder prediction 465 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi468g00001 Gabi-Chr468 22586 25362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi468g00001 539 674 Receptor kinase-like Gene Family AT3G58690 29.577 2.64e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Gabi468g00001 PK_Tyr_Ser-Thr 3.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi468g00001 - - lja:Lj2g3v0473820.1 947.192