Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4682g00002 ATGGCTTTCTTTAAGAACTTTTCACATAATGCAGTTTCACATAGTATCTTGGAAGATAAAAGCCAAGGACAGAATTCTGAAAGAATCCGTAGATCAGGTGGTAATGAATGTGCTGATGCAACTTCTAGTGATAAAGAATTTGATATGAACACGGAGCAACAGTATGGGAGTGATGGTGAACCAGATGGTGCCAGTGGGCTGCAAAACGAGGCAACTGCTGATGATCGAGTTGGTACAAGAGAATCAAACCTTGAGACTACTGGCAGGAAAACAGCTACAGTTGGAAGGTGGGGTTCTACATTTTGGAAGGACTGCCAACCTATGTGCCCTCAGAATGGTTCTGAATCAGGGCGTGAATCAAAAAGTGGATCAGACTATAGAAATGCAGGTATGTCTGAAGATAATTGGTCGGAAGGAAGAGGGGAAAGATTAGATTCAGAAGATGATGATGGACAAAAGGAATCAGGAAAAGGTTCAAGAGGTCATTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAGCAGAGTGACTCTTTGCATTACAGGGGTTTTCATCAACCCACTGGATCAAATTCTTGGCCTCAACGGATGTCTGCTATTGTCAATAGACGTGTGCATAGAAAATCTAGGATTTCAGATGATGCTGAAGGTGATGATGGTGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGACACAGACTTTGAGCCTGCAACAAGTGGCCGTGCTGCAAATAAGGATAAAGATTGGGAAGGTGAAGACTCAGAAGAAGCTGATGATAGTGATGAGGATGTTGATGTCTCAGATAATGAAGATTCTTACTTTGATAAGAAGGCTAAGGGAAGGCAACGAGTTAAAGTTGGACGAAGTGTAAAATTTTCTGGAGATCGCAAATCATATACTGCGTCCAGTCGACAAAGAAGAGTTAAATCATCTTTTGAATATGAAGATGATGAATCTGCAACTGAGGATTCTGATAGTGAGAGTGGTGAAGATTTCAGAAGCATGAAAAAGAAAGGTGTGCATGTACGTAAGAATAATGGTCGTTCTGCTGCTCCCACAAGTTTTTCTATGCGCAACAGTGAGGTTCGCACTTCTAGTAGGACAGTTAGGAAAGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGTCCCAAAAGGAAGAAATTGAAGAGGATGATGGGGACTCCATTGAGAAAGTGCTCTGGCATCAGCCTAAGGGCATGGCTGCAGAGGCTCAAAGGAATAATAGATCAACAGAGCCTATGTTAATGAGTCACTTATTTGATTCTGAACCTGATTGGAATGATATGGAATTCTTGATAAAATGGAAAGGCCAATCACATTTGCACTGTCAGTGGAAGTCTTTAGTTGAGTTGCAAAACCTCAGCGGTTTTAAGAAAGTTTTGAATTATACAAAGAAAGTGACAGAGGACATCAGGTATAGGATGGCAATCTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAAAACAGTCAGGTTGAAAGAATAATTGCAGATAGGATTAGCAAAGATAATTCCGGCAATGTTATTCCAGAATACTTGGTCAAATGGCAAGGACTATCTTATGCTGAAGTGACATGGGAGAAGGATATCAATATTGCTTTCGCTCAACATGCTATTGATGAGTATAAGGCTCGTGAGGCTGCCATGTCAATTCAAGGAAAGATGGTAGATCTTCAGCGTAAGAAGAGCAAAGAAAGTTTGCGGAAACTTGAAGAGCAACCTGAATGGCTGAAGGGTGGAAAGCTCCGGGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTAATCTTAGCTGATGAAATGGGTCTTGGTAAAACAGTTCAGTCGGTATCAATGCTTGGTTTTTTACAGAATGCCCAGCAAATCAATGGTCCTTTTCTTGTAGTTGTCCCATTGTCTACCTTATCGAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATGTTATTGTCTATGTTGGTACTCGTGCAAGTAGAGAGGTATGTCAACAATACGAATTTTATGATGATAAAAAGGCTGGCAGGCCTATAAAATTCAATGCACTGCTGACTACATATGAAGTAGTTCTCAAGGATAAGGCTGTTCTCTCCAAGATCAAGTGGAACTATCTGATGGTAGATGAGGCTCATCGACTAAAAAATAGTGAGGCACAGTTGTACACAGCACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACGGGTACTCCACTCCAGAACAGTGTTGAGGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTGATAAGTTCAAGAGCAAGGATGACTTTGTTCAAAACTATAAGAATCTGAGTTCTTTCAACGAGAATGAGCTTGCTAATCTTCATATGGAATTGAGGCCTCACATACTTAGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCGAAAATTGAGCGTATTCTTAGGGTTGAAATGTCTCCTCTTCAGAAGCAGTATTATAAGTGGATTCTGGAACGCAACTTTCATGATTTGAACAAAGGAGTTCGAGGGAATCAGGTTTCCCTTCTAAATATTGTGGTAGAATTGAAGAAGTGCTGTAACCATCCCTTCCTGTTTGAAAGTGCCGATCATGGTTTTGGTGGGGACTCTGGAAATAGTGACAGCAGTAAACTGGAAAGAATTGTCTTTAGCAGTGGCAAGCTTCTCATACTTGATAAGCTACTTGTCAGATTGCATGAAACAAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGCAGAGTATATGTCACTTCGAGGATTTCAATTTCAAAGGCTTGATGGCAGTACAAAAGCTGAGTTGCGACAGCAGGCAATGGATCATTTCAATGCACCAGGTAGTGATGATTTTTGCTTCCTTCTGTCAACAAGAGCAGGAGGTTTGGGTATCAACCTTGCCACAGCAGACACTGTTATAATATTTGATTCGGATTGGAATCCTCAAAATGACCTACAGGCAATGAGTAGAGCTCATCGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACTAGCAAAAGTGTTGAGGAAGATATTTTGGAACGGGCTAAGAAGAAGATGGTTCTCGACCACTTGGTGATTCAAAAGTTAAATGCAGAGGGTAGATTGGAGAAGAAAGAAGCCAAAAAAGGAAGTTATTTTGACAAAAATGAGCTGTCAGCAATCTTGAGATTTGGAGCCGAGGAGCTTTTTAAGGAAGAAAGAAATGACGAAGAAAGCAAGAAAAGACTCTTAGGCATGGACATAGATGAAATTCTTGAAAGAGCGGAGAAGGTTGAAGAGAAGGAAAATGAGGGAGAACAAGGGCATGAGTTATTAAGTGCCTTTAAGGTTGCTAATTTCTGTAATGATGAAGATGATGGAAGTTTCTGGAGTCGTTGGATCAAGCCTGACGCTGTTGCTCAAGCAGAGGAAGCTCTTGCTCCACGTGCTGCAAAGAATATTAAAAGCTATGCAGAGGATAATCAATCTGAAAGAAGTAGTAAAAGAAAAAAGAAGGAAAGTGAACCACCTGAGCGAGTTCAGAAACGCCGGAAAGCAGATTATTCAGCTCCTGTAACACCAATGATTGATGGAGCATCTGCCCAAGTGAGAAGTTGGTCATACGGGAATTTGTCTAAAAGAGATGCACTCCGTTTTTCTCGTTCAGTAATGAAATTTGGGAATGAGAGCCAAATCAACTTAATTGCTGCTGAGGTTGGTGGTGCAGTAGGAGCGGCTCCACCTGATGCACAAATTGAACTCTTCAATGCTCTAATTGATGGCTGTACAGAAGCAGTGGATCTTGGAAGTTTGGATCCCAAGGGGCCTTTGTTGGATTTCTTTGGTGTCCCAGTTAAGGCAAATGACTTGCTTACCCGTGTTCAAGAACTTCAACTCCTAGCAAAGCGCATTAGTCGGTATGAAGATCCCATTGCACAATTCCGTGTCTTAACATATCTCAAACCTTCAAACTGGTCAAAAGGTTGTGGGTGGAATCAAATTGATGACTCAAGATTGCTTCTTGGAGTATATTATCATGGATTTGGTAATTGGGAAAAGATAAGATTGGATGAAAGGCTTGGCCTTACGAAGAAAATTGCACCAGCAGAACTTCAACACCATGAAACTTTTTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGTCCTGTTGGAGCAAGAACTTGCTGCTCATGGTGTGAAAAATGCCTATAGCAAAGTTGGAAGGAAGCCTTCCAAGAAAGAGAGAGAACATCTTGTGAACGTCTCATTGTCACGTGGGCAGGAGAAAAAGATAAAATTGGGTTCTTCTAAAGTTAATGTCCAAATGAGAAAGGACAGGCTTCAGAAACCTCTAAAAGTTGAACCTATTCCAAAAGAGGAGGGTGAAATGTCTGACGATGAGGAAGTTTATGAGCAGTTCAAGGAAGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACCTTGAAACGTCTTCACAGGTTGCAGACAACCAGCGCCAATCTTCCGAAGGAAAAGGTGCTTTCAAAAATCCGCAACTACTTGCAGCTTCTTGGGCGAAGGATAGATCAAATTGTGTTAGAACATGAAGAGGAACCCTATAAGCAGAATAGAATGACTATGCGATTGTGGAAGTATGTTTCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATTTATTCAAAACTTAAACTGGAGCAAAATGCAGCAGGGGTTGGCCCCCCTCTTGCCAATGGGTCAGTATCTGGTCCATTTAGCAGGAATGGAAATCCTAACCATTCTTATCCATTCCCTCGACATATGGAGAGGCAAAGAGGATACAAGAATTTGACTACCCACCAAATGCCGGAATCAAGTAATAATACAGGCATGTCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAATGATGATTATTTCCAGGGTCAGCCACCACCTCAAAGAACCATGGGTAATGGAATTCAGAGTATGGATCCTAACTCGCTGGGGATCCTTGGGGCTGGACCATCTGATAGACGTTTTGTTAGTGAGAAACCTTTCAAGACTCGAGCTGGTGGGTTTCCTTCAAGACAAGGATTCTCTTCAGGAATTGAGTAG 5280 0.4127 MAFFKNFSHNAVSHSILEDKSQGQNSERIRRSGGNECADATSSDKEFDMNTEQQYGSDGEPDGASGLQNEATADDRVGTRESNLETTGRKTATVGRWGSTFWKDCQPMCPQNGSESGRESKSGSDYRNAGMSEDNWSEGRGERLDSEDDDGQKESGKGSRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYRGFHQPTGSNSWPQRMSAIVNRRVHRKSRISDDAEGDDGDADYEEEDEADEDDPDDTDFEPATSGRAANKDKDWEGEDSEEADDSDEDVDVSDNEDSYFDKKAKGRQRVKVGRSVKFSGDRKSYTASSRQRRVKSSFEYEDDESATEDSDSESGEDFRSMKKKGVHVRKNNGRSAAPTSFSMRNSEVRTSSRTVRKVSYVESEESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQPKGMAAEAQRNNRSTEPMLMSHLFDSEPDWNDMEFLIKWKGQSHLHCQWKSLVELQNLSGFKKVLNYTKKVTEDIRYRMAISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEVTWEKDINIAFAQHAIDEYKAREAAMSIQGKMVDLQRKKSKESLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQINGPFLVVVPLSTLSNWAKEFRKWLPDMNVIVYVGTRASREVCQQYEFYDDKKAGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTALSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGFGGDSGNSDSSKLERIVFSSGKLLILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLGMDIDEILERAEKVEEKENEGEQGHELLSAFKVANFCNDEDDGSFWSRWIKPDAVAQAEEALAPRAAKNIKSYAEDNQSERSSKRKKKESEPPERVQKRRKADYSAPVTPMIDGASAQVRSWSYGNLSKRDALRFSRSVMKFGNESQINLIAAEVGGAVGAAPPDAQIELFNALIDGCTEAVDLGSLDPKGPLLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDSRLLLGVYYHGFGNWEKIRLDERLGLTKKIAPAELQHHETFLPRAPNLRDRANVLLEQELAAHGVKNAYSKVGRKPSKKEREHLVNVSLSRGQEKKIKLGSSKVNVQMRKDRLQKPLKVEPIPKEEGEMSDDEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQNRMTMRLWKYVSTFSHLSGERLHQIYSKLKLEQNAAGVGPPLANGSVSGPFSRNGNPNHSYPFPRHMERQRGYKNLTTHQMPESSNNTGMSEAWKRRRRAENDDYFQGQPPPQRTMGNGIQSMDPNSLGILGAGPSDRRFVSEKPFKTRAGGFPSRQGFSSGIE 1759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4682g00002 1759 MobiDBLite consensus disorder prediction 265 283 - -
Gabi4682g00002 1759 SMART helicmild6 967 1051 IPR001650 -
Gabi4682g00002 1759 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 852 1082 - -
Gabi4682g00002 1759 Pfam Domain of unknown function (DUF4208) 1531 1623 IPR025260 -
Gabi4682g00002 1759 FunFam protein CHROMATIN REMODELING 5 isoform X2 531 583 - -
Gabi4682g00002 1759 SUPERFAMILY Chromo domain-like 508 584 IPR016197 -
Gabi4682g00002 1759 SMART chromo_7 414 497 IPR000953 -
Gabi4682g00002 1759 SMART chromo_7 527 586 IPR000953 -
Gabi4682g00002 1759 Gene3D - 852 1082 IPR027417 -
Gabi4682g00002 1759 MobiDBLite consensus disorder prediction 1725 1759 - -
Gabi4682g00002 1759 Coils Coil 1081 1101 - -
Gabi4682g00002 1759 FunFam Chromo domain-containing protein 1 404 529 - -
Gabi4682g00002 1759 Gene3D - 402 529 - -
Gabi4682g00002 1759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 845 1125 IPR027417 -
Gabi4682g00002 1759 CDD CD1_tandem 414 494 - -
Gabi4682g00002 1759 MobiDBLite consensus disorder prediction 1673 1710 - -
Gabi4682g00002 1759 CDD CD2_tandem 527 583 - -
Gabi4682g00002 1759 Gene3D - 612 851 IPR038718 -
Gabi4682g00002 1759 SUPERFAMILY Chromo domain-like 413 496 IPR016197 -
Gabi4682g00002 1759 Pfam SNF2-related domain 640 909 IPR000330 GO:0005524|GO:0140658
Gabi4682g00002 1759 SMART DUF4208_2 1519 1624 IPR025260 -
Gabi4682g00002 1759 ProSiteProfiles Chromo and chromo shadow domain profile. 529 593 IPR000953 -
Gabi4682g00002 1759 MobiDBLite consensus disorder prediction 105 131 - -
Gabi4682g00002 1759 FunFam Photoperiod-independent early flowering 1 591 865 - -
Gabi4682g00002 1759 Gene3D - 531 583 - -
Gabi4682g00002 1759 Pfam Chromo (CHRromatin Organisation MOdifier) domain 530 584 IPR023780 -
Gabi4682g00002 1759 MobiDBLite consensus disorder prediction 224 247 - -
Gabi4682g00002 1759 Pfam Helicase conserved C-terminal domain 938 1051 IPR001650 -
Gabi4682g00002 1759 Gene3D - 1347 1462 - -
Gabi4682g00002 1759 MobiDBLite consensus disorder prediction 136 169 - -
Gabi4682g00002 1759 MobiDBLite consensus disorder prediction 386 418 - -
Gabi4682g00002 1759 MobiDBLite consensus disorder prediction 1211 1239 - -
Gabi4682g00002 1759 MobiDBLite consensus disorder prediction 361 385 - -
Gabi4682g00002 1759 CDD SF2_C_SNF 927 1062 - -
Gabi4682g00002 1759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 941 1092 IPR001650 -
Gabi4682g00002 1759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 633 805 IPR014001 -
Gabi4682g00002 1759 MobiDBLite consensus disorder prediction 1207 1244 - -
Gabi4682g00002 1759 MobiDBLite consensus disorder prediction 189 206 - -
Gabi4682g00002 1759 MobiDBLite consensus disorder prediction 15 418 - -
Gabi4682g00002 1759 SMART ultradead3 617 816 IPR014001 -
Gabi4682g00002 1759 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 146 1660 - -
Gabi4682g00002 1759 ProSiteProfiles Chromo and chromo shadow domain profile. 416 495 IPR000953 -
Gabi4682g00002 1759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 842 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4682g00002 Gabi-Chr4682 16960 60576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4682g00002 643 1078 RAD5 or RAD16-like Gene Family AT1G02670 26.535 3.63e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4682g00002 SNF2_N 2.6e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4682g00002 K11367 - gmx:100792398 2828.89