Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4681g00002 ATGTCGGACGAGGAACACCATTTTGAGTCCAAGGCTGATGCCGGAGCCTCCAAGACCTATCCTCAGCAAGCTGGCACCATTCGCAAAAACGGTTACATCGTCATCAAGGCTCGCCCCTGCAAGGTTGTTGAAGTTTCAACTTCCAAGACTGGTAAGCATGGTCATGCTAAGTGCCACTTTGTTGGAATTGATATTTTCACTGGCAAGAAGCTTGAAGATATTGTGCCCTCTTCCCACAACTGTGATGTTCCCCGTGTGAATCGTATTGACTACCGGTTGATTGATATTTCTGAGGATGGATTTGTGGGCCTGCTTACTGATAATGGTGGCACCAAGGATGACCTGAGGCTTCCAACTGATGAGAGTCTGCTTACTCAGCTTCAAAGCTTCAAAGAATCAGCTTCTTCGTTCTGTCTTTGA 420 0.469 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPRVNRIDYRLIDISEDGFVGLLTDNGGTKDDLRLPTDESLLTQLQSFKESASSFCL 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4681g00002 139 PIRSF Transl_init_eIF5A 1 138 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi4681g00002 139 Gene3D - 1 85 IPR014722 -
Gabi4681g00002 139 Gene3D - 86 138 IPR012340 -
Gabi4681g00002 139 MobiDBLite consensus disorder prediction 1 21 - -
Gabi4681g00002 139 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 131 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi4681g00002 139 SUPERFAMILY Translation proteins SH3-like domain 15 92 IPR008991 -
Gabi4681g00002 139 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Gabi4681g00002 139 SMART eIF_5a_2 85 138 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi4681g00002 139 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 129 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi4681g00002 139 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi4681g00002 139 SUPERFAMILY Nucleic acid-binding proteins 86 134 IPR012340 -
Gabi4681g00002 139 NCBIfam translation initiation factor IF-5A 17 128 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4681g00002 Gabi-Chr4681 71727 73008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4681g00002 1 132 Eukaryotic Initiation Factors Gene Family AT1G69410 84.962 1.12e-80 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4681g00002 K03263 - ming:122077144 248.825