Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi467g00007 ATGGCCCCTTCAAGCTATTCCAAATCTCCTTGTGCTGCCTGCAAATTTTTGAGAAGGAAATGCATGCCAGATTGCATTTTTGCTCCATATTTCCCACAAGAAGAGCCTCAAAAGTTTGCAAATGTTCACAAGATATTTGGTGCAAGCAATGTGACTAAACTCCTGAATGAAGTCCAACCAAATCTAAGGCAGGATGCTATGAACTCTCTGGCTTATGAAGCTGAAGCAAGGATTAAAGATCCTGTCTATGGTTGTCTTGGGGTCATTCCAGTGCTCCAAAGGAAAATCATTATGCTCCAAAAGGAACTTGATTTCATAAATGCTGAACTCATCCGCAATACCAGCAATGGAATGCCAACTCAAGCTGGGAGAAGGATTAATGAAGGAGCTTCCTCTCTTGGTTTTCATCATTCTTCTATTTAG 423 0.4113 MAPSSYSKSPCAACKFLRRKCMPDCIFAPYFPQEEPQKFANVHKIFGASNVTKLLNEVQPNLRQDAMNSLAYEAEARIKDPVYGCLGVIPVLQRKIIMLQKELDFINAELIRNTSNGMPTQAGRRINEGASSLGFHHSSI 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi467g00007 140 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Gabi467g00007 140 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 115 - -
Gabi467g00007 140 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi467g00007 Gabi-Chr467 69953 70377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi467g00007 4 125 AS2 family AT3G27650 66.667 2.21e-58 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi467g00007 LOB 1.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi467g00007 - - gmx:100306630 213.001