Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi467g00006 ATGCTCATAGCAATGGCTGGGTTGGAGGAATTGAGAAAAAAGCTTGCACCTTTGTTTGATGCTGAGAAGGGCTTCTCAACAAGTTCAACCTTGGACCCTTGTGATTCTTACACAAAGCTATCGGATGGTGGGACTGTAAACTTGTTGAGTAGATCATATGGTGTGTACAATATCAACGAGCTTGGTTTGCAAAAGTCCACATCTCGGTCTGTACATGAAACTGATCACAGTGAGAAAACATATAGATGTGGTTCTCATGAAATGAGAATATTTGGAGCAATAGGTAGTGGGGCCAGTAGTGTTGTGCAGAGAGCTATACATATACCAGCACATAGGATTCTTGCATTAAAGAAGATCAATATCTTTGAGAAGGAGAAAAGGCAGCAGCTCCTAACTGAGATAAGGACATTATGTGAAGCACCTTGTTATCAGGGTCTTGTGGAATTTCATGGGGCATTTTACACTCCAGACTCGGGACAGATAAGCATAGCTTTGGAGTACATGGACGGAGGATCACTTGCAGATATCTTGAAAAAGCGTAGAAGGATACCTGAACCGATTCTATCATCCATGTTTCAGAAGCTCCTACATGGTCTAAGCTATCTGCATGGAGTCAGACATTTAGTTCACAGAGACATAAAGCCTGCTAACTTACTTGTAAATCTCAAGGGGGAACCAAAAATTACTGATTTTGGTATTAGTGCTGGCTTAGAGAATTCAGTGGCAATGTGTGCTACATTTGTTGGAACTGTTACATACATGTCACCTGAGAGAATTCGAAATGAAAGCTATTCATATCCAGCCGATATTTGGAGCCTTGGTCTTGCACTCCTTGAGTGCGGGACAGGAGAATTCCCATATACAGCTAATGAAGGTCCTGTCAATCTTATGTTGCAGATCCTGGATGATCCATCGCCATCACCATCAAAGCACAAGCTTTCACCTGAGTTCTGCTCCTTTGTTGATGCTTGCTTACAGAAGGATCCAGATATTAGGCCAACAGCAGATCAGCTGCTTTTGCACCCCTTTATCACCAAGCATGAAACTGCCAAGGTAGATTTAGCAGGATTTGTTCGTAGCGTTTTTGATCCTACACAAAGAATGAAGGACTTGGCAGATATGTTGACAATACATTATTACTTACTATTTGATGGACCTGATGATTTGTGGCAACATACAAAGAGCTTATATAACGAAAGCTCAATTTTCAGTTTTTCTGGGAAACAACATGGTGGTCCAAACAATATATTTACAACTCTATCAAGTATTAGAAGTACATTAGTTGGTGAATGGCCTCCTGATAAGTTGGTGCATGTGGTTGAGAAGCTTCAATGCCGTGCTCATGGTGAAGATGGAGTTGCAATCAGGGTGTCAGGGTCCTTCATAGTTGGGAATCAGTTCCTGATATGTGGAGATGGCATTCAAGTAGAAGGTTTGCCAACCTTTAAGGATCTTGAAATTGATATTTCTAGCAAGAGAATGGGTACATTTCATGAACAATTCATAGTTGAACCAACCAGCCTTATTGGATGCTATGCCATTGTTAAACAAGAACTGTACATTAACCAGTAA 1572 0.4103 MLIAMAGLEELRKKLAPLFDAEKGFSTSSTLDPCDSYTKLSDGGTVNLLSRSYGVYNINELGLQKSTSRSVHETDHSEKTYRCGSHEMRIFGAIGSGASSVVQRAIHIPAHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYQGLVEFHGAFYTPDSGQISIALEYMDGGSLADILKKRRRIPEPILSSMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKHKLSPEFCSFVDACLQKDPDIRPTADQLLLHPFITKHETAKVDLAGFVRSVFDPTQRMKDLADMLTIHYYLLFDGPDDLWQHTKSLYNESSIFSFSGKQHGGPNNIFTTLSSIRSTLVGEWPPDKLVHVVEKLQCRAHGEDGVAIRVSGSFIVGNQFLICGDGIQVEGLPTFKDLEIDISSKRMGTFHEQFIVEPTSLIGCYAIVKQELYINQ 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi467g00006 523 CDD PKc_MAPKK_plant_like 89 348 - -
Gabi467g00006 523 ProSiteProfiles Nuclear transport factor 2 domain profile. 371 521 IPR018222 -
Gabi467g00006 523 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Gabi467g00006 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gabi467g00006 523 Gene3D Phosphorylase Kinase; domain 1 57 169 - -
Gabi467g00006 523 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 35 402 - -
Gabi467g00006 523 Gene3D Transferase(Phosphotransferase) domain 1 170 369 - -
Gabi467g00006 523 ProSiteProfiles Protein kinase domain profile. 88 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi467g00006 523 Pfam Protein kinase domain 92 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi467g00006 523 Gene3D - 370 521 - -
Gabi467g00006 523 FunFam mitogen-activated protein kinase kinase 3 61 169 - -
Gabi467g00006 523 FunFam mitogen-activated protein kinase kinase 3 170 366 - -
Gabi467g00006 523 FunFam Mitogen-activated protein kinase kinase 3 368 522 - -
Gabi467g00006 523 SUPERFAMILY NTF2-like 369 466 IPR032710 -
Gabi467g00006 523 SUPERFAMILY Protein kinase-like (PK-like) 90 380 IPR011009 -
Gabi467g00006 523 SMART serkin_6 88 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi467g00006 Gabi-Chr467 54018 58812 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi467g00006 37 523 MAP Kinase Kinase Gene Family AT5G40440 79.261 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gabi467g00006 Pkinase 1.1e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi467g00006 K20607 - gmx:100784935 969.918