Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi467g00005 ATGCTCATAGCAATGGCTGGGTTGGAGGAATTGAGAAAAAAGCTTGCACCTTTGTTTGATGCTGAGAAGGGCTTCTCAACAAGTTCAACCTTGGACCCTTGTGATTCTTACACACTATCGGATGGTGGGACTGTAAACTTGTTGAGTAGATCATATGGTGTGTACAATATCAACGAGCTTGGTTTGCAAAAGTCCACATCTCGGTCTGTACATGAAACTGATCACAGTGAGAAAACATATAGATGTGGTTCTCATGAAATGAGAATATTTGGAGCAATAGGTAGTGGGGCCAGTAGTGTTGTGCAGAGAGCTATACATATACCAGCACATAGGATTCTTGCATTAAAGAAGATCAATATCTTTGAGAAGGAGAAAAGGCAGCAGCTCCTAACTGAGATAAGGACATTATGTGAAGCACCTTGTTATCAGGGTCTTGTGGAATTTCATGGGGCATTTTACACTCCAGACTCGGGACAGATAAGCATAGCTTTGGAGTACATGGACGGAGGATCACTTGCAGATATCTTGAAAAAGCGTAGAAGGATACCTGAACCGATTCTATCATCCATGTTTCAGAAGCTCCTACATGGTCTAAGCTATCTGCATGGAGTCAGACATTTAGTTCACAGAGACATAAAGCCTGCTAACTTACTTGTAAATCTCAAGGGGGAACCAAAAATTACTGATTTTGGTATTAGTGCTGGCTTAGAGAATTCAGTGGCAATGTGTGCTACATTTGTTGGAACTGTTACATACATGTCACCTGAGAGAATTCGAAATGAAAGCTATTCATATCCAGCCGATATTTGGAGCCTTGGTCTTGCACTCCTTGAGTGCGGGACAGGAGAATTCCCATATACAGCTAATGAAGGTCCTGTCAATCTTATGTTGCAGATCCTGGATGATCCATCGCCATCACCATCAAAGCACAAGCTTTCACCTGAGTTCTGCTCCTTTGTTGATGCTTGCTTACAGAAGGATCCAGATATTAGGCCAACAGCAGATCAGCTGCTTTTGCACCCCTTTATCACCAAGCATGAAACTGCCAAGGTAGATTTAGCAGGATTTGTTCGTAGCGTTTTTGATCCTACACAAAGAATGAAGGACTTGGCAGATATGTTGACAATACATTATTACTTACTATTTGATGGACCTGATGATTTGTGGCAACATACAAAGAGCTTATATAACGAAAGCTCAATTTTCAGTTTTTCTGGGAAACAACATGGTGGTCCAAACAATATATTTACAACTCTATCAAGTATTAGAAGTACATTAGTTGGTGAATGGCCTCCTGATAAGTTGGTGCATGTGGTTGAGAAGCTTCAATGCCGTGCTCATGGTGAAGATGGAGTTGCAATCAGGGTGTCAGGGTCCTTCATAGTTGGGAATCAGTTCCTGATATGTGGAGATGGCATTCAAGTAGAAGGTTTGCCAACCTTTAAGGATCTTGAAATTGATATTTCTAGCAAGAGAATGGGTACATTTCATGAACAATTCATAGTTGAACCAACCAGCCTTATTGGATGCTATGCCATTGTTAAACAAGAACTGTACATTAACCAGTAA 1569 0.4105 MLIAMAGLEELRKKLAPLFDAEKGFSTSSTLDPCDSYTLSDGGTVNLLSRSYGVYNINELGLQKSTSRSVHETDHSEKTYRCGSHEMRIFGAIGSGASSVVQRAIHIPAHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYQGLVEFHGAFYTPDSGQISIALEYMDGGSLADILKKRRRIPEPILSSMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKHKLSPEFCSFVDACLQKDPDIRPTADQLLLHPFITKHETAKVDLAGFVRSVFDPTQRMKDLADMLTIHYYLLFDGPDDLWQHTKSLYNESSIFSFSGKQHGGPNNIFTTLSSIRSTLVGEWPPDKLVHVVEKLQCRAHGEDGVAIRVSGSFIVGNQFLICGDGIQVEGLPTFKDLEIDISSKRMGTFHEQFIVEPTSLIGCYAIVKQELYINQ 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi467g00005 522 SUPERFAMILY NTF2-like 368 465 IPR032710 -
Gabi467g00005 522 FunFam mitogen-activated protein kinase kinase 3 169 365 - -
Gabi467g00005 522 FunFam Mitogen-activated protein kinase kinase 3 367 521 - -
Gabi467g00005 522 FunFam mitogen-activated protein kinase kinase 3 60 168 - -
Gabi467g00005 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Gabi467g00005 522 ProSiteProfiles Nuclear transport factor 2 domain profile. 370 520 IPR018222 -
Gabi467g00005 522 Gene3D Phosphorylase Kinase; domain 1 81 162 - -
Gabi467g00005 522 ProSiteProfiles Protein kinase domain profile. 87 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi467g00005 522 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Gabi467g00005 522 Gene3D - 362 520 - -
Gabi467g00005 522 SMART serkin_6 87 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi467g00005 522 CDD PKc_MAPKK_plant_like 88 347 - -
Gabi467g00005 522 Gene3D Transferase(Phosphotransferase) domain 1 163 358 - -
Gabi467g00005 522 SUPERFAMILY Protein kinase-like (PK-like) 89 379 IPR011009 -
Gabi467g00005 522 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 29 401 - -
Gabi467g00005 522 Pfam Protein kinase domain 91 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi467g00005 Gabi-Chr467 54018 58812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi467g00005 34 522 MAP Kinase Kinase Gene Family AT5G40440 78.937 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gabi467g00005 Pkinase 1.1e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi467g00005 K20607 - gmx:100784935 974.541