Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi467g00004 ATGGACATTCCCAAACCCCAATCCCTCTTCAACCACATTGCCTCCAGGGAGCTCAATGCCTATCGAGTTAGGAAAAGGCCTTACATGGATGGATTGGTCTCTGGCTTCAGCGAAATCGGAGCTATGGCCGTACAACACAATGCCGAAGACACTGTTCCCCTCTCTCTCTCCTTCTGTAAGACCTCCAAATTCTCTCACATTCTAGCTTTATCTGATGAAGGTGGATACCTGAGCTTGTTCGATACTCGCATCAACTTCCCAGATTCCGCAACCTTTGAACAAAACGGAGAGAAAGCAAAGATTTGCGATTGGGTTTCTCATTGTAATGCTGTTTTTGATGTTTGTTGGATTAAGGAAGATACCCAGATTCTCACAGCTTCTGGTGATCAAACAATGAAGGTATGGGATGTTCAAGAAAAGAAGTGTCTTGGAGTGTTGGCGGGGCACCATGGAAGTGTGAAATCCATATGTTCTCATCCAACTAATAATGATATTGTTGTCTCCGGTTCAAGGGATGGATCCTTTCGTCTTTGGGACTTGAGATGCAGCTCCACGTCTAAGAGTAGACATGGAGAACTTAACATATGTTCAACAGCTGTCGTCAAAGGAGCACATGTTTCGTCTCTAGCAAAACGAGTTAGGAAGGGCAAGGCTGCTTCCATGAGCATTACATCTGTTCTTTGTCTCAAGGATCAGGTTTCCATAGCCACTGCTGGGGCGGTGGATAGTGTTTTGAAGTTTTGGGATACTAGACATCTGAAAAGTTTTGTCACGATGACATATCCTCAGTCAACAGATAAGGGAAGAGTACATGGTATATCTAGCTTGTCCCAAGATGACAGTGGACTTTTTCTTTCAGCCTCTTGCATAGATAACCGAATTTATCTGTATAACATCCTTCAACTCGAAAATGGGCCTTTAAGGTCTTTCTCTGGATGTCAAATAGATTCATTTTTTGTAAAGTCTGCAATTAGCCCTGATGCATCTCACATAGTCAGTGGTTCTAGTGATGGAAATGCCTATGTTTGGCAGGTTAACAAGCCTCAAGAGGAACCTATTATTTTGAAAAGTCATGATGGGGAAGTTACATCAGTTGACTGGTGCTGCTCTGAGGTTGGCAAATTAGCAACTTGTTCTGATGATTTCACAGTTCGGACTTGGAATAAAAGCAGTTATATCTGCAGAACAAAAACTCCATCTACCATCCGAAGAAGAGTAATGGCTATGCCTAGTACAGAATGCAAAATGCTTTTAAATCATGAAGAAATGTGCCCCAAGTCAGGAGACAATGTTTTTTTATCCAATGAATCACTGAACCACCCAATTAAATCAGCCACTCCAATCACACCACCTAAAATGAATACATATGAAGGCCATAAGAACAAGCTTTCCTCAGGATTTGATCAAACCACATCTTCTGAAAAAACTCCAGAGTCTGCTTTGAAGAGCCCCTCAACAGTTTTGAACCCTCCATCCTCCATAAAAAGAACTATCCGGGACTACTTTTTAGCATCTTCATGA 1521 0.4214 MDIPKPQSLFNHIASRELNAYRVRKRPYMDGLVSGFSEIGAMAVQHNAEDTVPLSLSFCKTSKFSHILALSDEGGYLSLFDTRINFPDSATFEQNGEKAKICDWVSHCNAVFDVCWIKEDTQILTASGDQTMKVWDVQEKKCLGVLAGHHGSVKSICSHPTNNDIVVSGSRDGSFRLWDLRCSSTSKSRHGELNICSTAVVKGAHVSSLAKRVRKGKAASMSITSVLCLKDQVSIATAGAVDSVLKFWDTRHLKSFVTMTYPQSTDKGRVHGISSLSQDDSGLFLSASCIDNRIYLYNILQLENGPLRSFSGCQIDSFFVKSAISPDASHIVSGSSDGNAYVWQVNKPQEEPIILKSHDGEVTSVDWCCSEVGKLATCSDDFTVRTWNKSSYICRTKTPSTIRRRVMAMPSTECKMLLNHEEMCPKSGDNVFLSNESLNHPIKSATPITPPKMNTYEGHKNKLSSGFDQTTSSEKTPESALKSPSTVLNPPSSIKRTIRDYFLASS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi467g00004 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 388 IPR001680 GO:0005515
Gabi467g00004 506 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 5 504 - -
Gabi467g00004 506 SUPERFAMILY WD40 repeat-like 62 399 IPR036322 GO:0005515
Gabi467g00004 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Gabi467g00004 506 MobiDBLite consensus disorder prediction 442 492 - -
Gabi467g00004 506 SMART WD40_4 259 298 IPR001680 GO:0005515
Gabi467g00004 506 SMART WD40_4 303 344 IPR001680 GO:0005515
Gabi467g00004 506 SMART WD40_4 139 179 IPR001680 GO:0005515
Gabi467g00004 506 SMART WD40_4 348 388 IPR001680 GO:0005515
Gabi467g00004 506 SMART WD40_4 97 136 IPR001680 GO:0005515
Gabi467g00004 506 SMART WD40_4 209 249 IPR001680 GO:0005515
Gabi467g00004 506 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Gabi467g00004 506 Pfam WD domain, G-beta repeat 354 388 IPR001680 GO:0005515
Gabi467g00004 506 Pfam WD domain, G-beta repeat 306 343 IPR001680 GO:0005515
Gabi467g00004 506 Pfam WD domain, G-beta repeat 106 136 IPR001680 GO:0005515
Gabi467g00004 506 MobiDBLite consensus disorder prediction 458 492 - -
Gabi467g00004 506 Gene3D - 202 420 IPR015943 GO:0005515
Gabi467g00004 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Gabi467g00004 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 353 IPR001680 GO:0005515
Gabi467g00004 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Gabi467g00004 506 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Gabi467g00004 506 Gene3D - 40 190 IPR015943 GO:0005515
Gabi467g00004 506 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Gabi467g00004 506 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Gabi467g00004 506 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Gabi467g00004 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 188 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi467g00004 107 343 U-box Gene Family AT1G04510 24.324 7.22e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi467g00004 K11790 - gmx:100775857 772.696