Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4679g00001 ATGGAGTTGCCGGGTAATCACCAAGCCGTCGATGGAGATTCCATTGACGTTCGAATCTTTGGCCACAGAGACGAAGATGATGACAAGCCCCAACCTCTCACCGGTGACGGTGCCAGTCCCGGAAAAATATTTATAGGTGGTTTAGCCAGAGAAACAACGATTGTCCAATTTGTCAAACACTTCGGTAAATATGGTGAAATTACGGATTCCGTGATAATGAAGGACCGGAAGACCGGGCAGCCTCGTGGTTTCGGCTTTATAACTTATGCAGATCCCTCTGTGGTTGATAAAGTTATTGAGGACACTCATGTTATCAATGGCAAACAAGTGGAGATTAAGCGGACAATACCTAGGGGAGCTCTTGGCTCTAAGGACTTCAGGACGAAGAAAATTTTTGTTGGTGGGATTCCTTCAACTGTGACTGAAGATGAATTCAGGGACTTCTTTATGCGCTATGGAGAAGTGAAAGATCACCAAATAATGCGTGACCACTCCACCAATCGTTCACGTGGCTTTGGGTTTATTACCTACGACTCTGAGGAAGCTGTTGATGATGTCTTAGCTGTCGGGAACAAAATCGAGTTTGCTGGAGCTCAGGTGGAAATTAAGAAGGCAGAACCGAAGAAGCCAAATCCACCACCTCCCTCATCCAAGCGCTATAATGACTTGCATTCTCCATATGGTGGTGGATATGGAGATGCTTATGATGGATTTAGTGGTAACTTTGGCATTGGTGGCTATAGGTCAGGCAGTGTCTATGGAGGTAGGGGTGGTGCTTATGGTGGCTATGGAAGTGAATTTGGCGGGTATGGAGGATATGCTGGTGCCATGGGGCCCTATAGAGGAGATCCTTCACTTGGGTACGCTGGTCGGTATGGTGGAGGCTTTGGCAGAGGCTATGATCTTGGTGATTATGGTGGAGCTAGTGAGAGTTATGGGGCATATGGTGGTGGTGGCTCCTCTGGTAGTGCCTATGGAAGCAGCTATGATGCCAGCCTAGGAGGTGGATATGGGGGGGCTAGTGGAGGCTCCTTTTATGGGACTAGAGGTGCATATGGTGGTACAGGAACTGGTCGATATCATCCTTACGGAAGATAG 1098 0.4791 MELPGNHQAVDGDSIDVRIFGHRDEDDDKPQPLTGDGASPGKIFIGGLARETTIVQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGALGSKDFRTKKIFVGGIPSTVTEDEFRDFFMRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDVLAVGNKIEFAGAQVEIKKAEPKKPNPPPPSSKRYNDLHSPYGGGYGDAYDGFSGNFGIGGYRSGSVYGGRGGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGGFGRGYDLGDYGGASESYGAYGGGGSSGSAYGSSYDASLGGGYGGASGGSFYGTRGAYGGTGTGRYHPYGR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4679g00001 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Gabi4679g00001 365 FunFam Heterogeneous nuclear ribonucleoprotein 1 121 242 - -
Gabi4679g00001 365 FunFam Heterogeneous nuclear ribonucleoprotein 1 40 120 - -
Gabi4679g00001 365 Gene3D - 41 120 IPR012677 -
Gabi4679g00001 365 SUPERFAMILY RNA-binding domain, RBD 127 236 IPR035979 GO:0003676
Gabi4679g00001 365 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 26 365 - -
Gabi4679g00001 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Gabi4679g00001 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Gabi4679g00001 365 SMART rrm1_1 130 203 IPR000504 GO:0003723
Gabi4679g00001 365 SMART rrm1_1 42 113 IPR000504 GO:0003723
Gabi4679g00001 365 MobiDBLite consensus disorder prediction 203 223 - -
Gabi4679g00001 365 SUPERFAMILY RNA-binding domain, RBD 37 119 IPR035979 GO:0003676
Gabi4679g00001 365 Gene3D - 129 212 IPR012677 -
Gabi4679g00001 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4679g00001 Gabi-Chr4679 54915 69839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4679g00001 16 183 Eukaryotic Initiation Factors Gene Family AT1G71770 25.806 3.47e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4679g00001 K12741 - gmx:100813165 468.003