Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4674g00012 ATGGACTATGGATGTCAACACTACCGGAGAAGATGTCGTATCAGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCACTGTCACAATGAGGCGAAAAATGATATCGACATTGATCAGAAGCATAGACATGACATTCCACGACACCAAGTCAAGCAGGTGATATGTTCACTTTGTGGGACGGAACAAGAGGTTCAGCAAAATTGTATTAATTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGACATGCAAGCTCTTTGATGATGATATATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGACGTGAGAATTTCTTCCATTGCTACAAGTGTCGTTGCTGCTACTCAACTCTGCTGAACAACAATCATCCTTGTGTGGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGAGGTCACTGTTATGCCGTGTGGACATACAATTCATAAGAGCTGCCTGAACGAAATGAGAGAACATTTCCAGTATGCATGCCCGCTCTGCTCCAAGTCAATATGTGACATGTCAAAGGTTTGGGAGAAATTTGACGTGGAGATTGCTGCTACACCAATGCCTGAGCCATATCGAGATAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAACTTCTCACGTTCAGTTCCATTTTGTGGCTCGAAAATGCCTGAATTGCAAATCCTACAATACACGACAGACCAGAGGCTGA 753 0.4343 MDYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDIDIDQKHRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRTGGRENFFHCYKCRCCYSTLLNNNHPCVEGAMHHDCPVCFEYLFESRNEVTVMPCGHTIHKSCLNEMREHFQYACPLCSKSICDMSKVWEKFDVEIAATPMPEPYRDKMVWILCNDCGKTSHVQFHFVARKCLNCKSYNTRQTRG 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4674g00012 250 ProSiteProfiles Zinc finger RING-type profile. 141 184 IPR001841 -
Gabi4674g00012 250 Pfam Zinc-ribbon 188 246 IPR039512 -
Gabi4674g00012 250 Pfam CHY zinc finger 5 86 IPR008913 GO:0008270
Gabi4674g00012 250 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 3 249 - -
Gabi4674g00012 250 SUPERFAMILY Zinc hairpin stack 77 134 IPR037275 -
Gabi4674g00012 250 Pfam Ring finger domain 140 183 IPR001841 -
Gabi4674g00012 250 SUPERFAMILY CHY zinc finger-like 3 76 IPR037274 GO:0008270
Gabi4674g00012 250 ProSiteProfiles Zinc finger CHY-type profile. 1 74 IPR008913 GO:0008270
Gabi4674g00012 250 Gene3D - 212 250 - -
Gabi4674g00012 250 CDD RING-H2_Pirh2-like 140 184 - -
Gabi4674g00012 250 ProSiteProfiles Zinc finger CTCHY-type profile. 76 140 IPR017921 -
Gabi4674g00012 250 SUPERFAMILY RING/U-box 140 189 - -
Gabi4674g00012 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 186 IPR013083 -
Gabi4674g00012 250 SMART ring_2 141 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4674g00012 Gabi-Chr4674 69848 75823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4674g00012 3 250 C2H2 Transcription Factor Family AT3G18290 38.583 3.43e-52 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4674g00012 K10144 - gmx:100803569 539.65