Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4674g00011 ATGCACTCTGAGCCTCTGCATTTTGAGTGCAATGACATGATTACTGAGAAAAATGCATATCCTCCAGAATCAAATGCAGAGCGCTTGCCTGGAGAAGAATCAGGTCAATCAATAGATCACAAAAATGCCAATGAATTGCTAGAGAAAGGATATATGGACTATGGATGTCAACACTACCGGAGAAGATGTCGTATCAGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCACTGTCACAATGAGGCGAAAAATGATATCGACATTGATCAGAAGCATAGACATGACATTCCACGACACCAAGTCAAGCAGGTGATATGTTCACTTTGTGGGACGGAACAAGAGGTTCAGCAAAATTGTATTAATTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGACATGCAAGCTCTTTGATGATGATATATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGACGTGAGAATTTCTTCCATTGCTACAAGTGTCGTTGCTGCTACTCAACTCTGCTGAACAACAATCATCCTTGTGTGGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGAGGTCACTGTTATGCCGTGTGGACATACAATTCATAAGAGCTGCCTGAACGAAATGAGAGAACATTTCCAGTATGCATGCCCGCTCTGCTCCAAGTCAATATGTGACATGTCAAAGGTTTGGGAGAAATTTGACGTGGAGATTGCTGCTACACCAATGCCTGAGCCATATCGAGATAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAACTTCTCACGTTCAGTTCCATTTTGTGGCTCGAAAATGCCTGAATTGCAAATCCTACAATACACGACAGACCAGAGGCTGA 906 0.4283 MHSEPLHFECNDMITEKNAYPPESNAERLPGEESGQSIDHKNANELLEKGYMDYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDIDIDQKHRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRTGGRENFFHCYKCRCCYSTLLNNNHPCVEGAMHHDCPVCFEYLFESRNEVTVMPCGHTIHKSCLNEMREHFQYACPLCSKSICDMSKVWEKFDVEIAATPMPEPYRDKMVWILCNDCGKTSHVQFHFVARKCLNCKSYNTRQTRG 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4674g00011 301 SMART ring_2 192 234 IPR001841 -
Gabi4674g00011 301 SUPERFAMILY CHY zinc finger-like 54 127 IPR037274 GO:0008270
Gabi4674g00011 301 SUPERFAMILY Zinc hairpin stack 128 185 IPR037275 -
Gabi4674g00011 301 Gene3D - 263 301 - -
Gabi4674g00011 301 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 40 300 - -
Gabi4674g00011 301 Pfam CHY zinc finger 56 137 IPR008913 GO:0008270
Gabi4674g00011 301 SUPERFAMILY RING/U-box 191 240 - -
Gabi4674g00011 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 237 IPR013083 -
Gabi4674g00011 301 MobiDBLite consensus disorder prediction 18 37 - -
Gabi4674g00011 301 ProSiteProfiles Zinc finger RING-type profile. 192 235 IPR001841 -
Gabi4674g00011 301 CDD RING-H2_Pirh2-like 191 235 - -
Gabi4674g00011 301 ProSiteProfiles Zinc finger CTCHY-type profile. 127 191 IPR017921 -
Gabi4674g00011 301 Pfam Ring finger domain 191 234 IPR001841 -
Gabi4674g00011 301 ProSiteProfiles Zinc finger CHY-type profile. 49 125 IPR008913 GO:0008270
Gabi4674g00011 301 Pfam Zinc-ribbon 239 297 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4674g00011 Gabi-Chr4674 69848 75824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4674g00011 54 301 C2H2 Transcription Factor Family AT3G18290 38.583 9.42e-53 184