Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4674g00006 ATGGACGACGAATCGAATCGTAGCCACGGCCAAGCTCCGCCGTCACCTCCGCCGCCGGAACCACATTCGTATGACGGTGACGGCGAGGAAGATGATGACGATGATGATGAAGAAGAAGAAGAGGTGGAGGAGTCTAAGAAGGAAGAAGAGGAGATGATTGCAAAGGTTAACAAGCTAATGGAGAGGATAACTGGTGCTTCTGATAACCCTAAACCAACCGTTCTCCACGCCCTTGCCTCCATTCTCGAAACCCAAGAGTCTCGATACATGGAAGAGAATGACCATTCTTCATCCAGCAACGCCCGTGCTTCCCATAACGTTGGGCGACTTGGGAGCATAATCCGGGAGAATGATGAGTTCTTTGAGTTGATATCTTCAAAGTTTCTGTCAGAAACAAGGTACACAACTTCCATTCGGGCTGCTGCTGTCAGGCTTCTCCTGATCTGTTCGCTAACTTGGATTTATCCTCATGTTTTTGAAGAATCTGTCCTGGATAACATCAAACATTGGGTAATAGATGAGAATTCTAGTTTGTCTGCTGAGGAGCAAATTCTGAAGCGTAATCCAGGGAGAAGGGATGCTTCAGATTCTGAAATGTTGAAAACATATTCTACTGGACTCCTTGCTGTGTGTTTAGCGAGTGGAGGTCAAGTGGTTGAAGATGTCTTGACATCTGGCTTGTCAGCCAAGCTTATGCATTATCTACGTTCGCGTGTGCTGGGGGAGACAAGTAGCAGTCAGAAAGACATTAATAATTTATCAGAGAGTAGGCATGCATCTGGGAATACTTCATTGAAAGGCCGAGATGATGGTCGCAGTAGATGTCGCCAGGTCCTGGAATCAAGTAATTTAGATGATACAAGAACGATTGATGAGAGATCATTAGATGATCGAATTCTTGTTAGGGATCTAGATAAAAGCATCAGTGTACAAACTTGCCAAGAAGATTCTTGGATAGATGGTGAACTCCATGATGGGTTGAGTGAAGGAGCTGACATCTGTGAGGTAGACATTGATGAAGAGGACAGATTGCAGTGCAGAGATTTATGTGATGGAAGGATAAAATATGGTGACCATGAAGACAATGCTAGAGGTGACTCTTCGAGACGGCGTGCAAACCATGGATGGGGAAGATCCAGATGGACGGGTAGGGTCAATGAAGGGACTGTAGAAAGTGAACCAGTTTTGTCATCCCCTGGTTCCAGTGGTCGATTAGGACAGGGAAAGAGTGTTAGAGATAGGAGCATATTGAGGAATGTTGATATCAGAGTCGTACCTGATTCTAAGAAGATTGCCAGGATTACTTCTGAGGCAAATGTTTTGGAAAGAGAGGATAATGATGATTGTTTCCAAGAGTGCTGTATTGGAAGTAAAGATATCTCTGATCTTGTTAGGAAAGCAGTCCAAGCTGCAGAAGCTGAAGCTAGATCTGCCAATGCACCAGAAGAAGCGGTCAAGGCAGCTGGTGATGCTGCTGCTGAACTTGTTAAAACTGCTGCTTCAGAGGAATTTAAATCCACTAATGATGAAGAAGCTGCTGTTTTAGCTGCTTCAAAAGCTGCATCAACTGTTATTGATGCTGCATCTGCCGCTGAGAATGCAGGTGTCAAAGAAATAGAATTTGGTGAGGAAGTTGAAGATTATTTCATCCCGGATATTCAATCACTTCTGCAGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGCTACTTGGAGAATATGTAGAAGTTCTTGGCCCTGTATTACATGAGAAGGGGGTTGATGTCTGTCTTGCACTGTTGCAACAGAATTCTAAACATCGTGAGGCTTCCAAAGTTGCCCTTCTGTTGCCTGATGTTATGAAACTGATCTGTGCTTTGGCTGCTCATAGGAAGTTTGCTGCACTATTTGTGGACCGTGGGGGCATGCAAAAGCTTCTTGCTGTTCCTAGAATGACTCAAACTTTCTTTGGCCTTTCTTCTTGTCTATTTACTATCGGTTCTCTGCAGGGTATAATGGAACGGGTTTGTGCTCTTTCGTCAGATGTTATTTATCGTTTGGTTGAGTTGGCTCTCCAGCTCCTTGAGTGCAACCAAGACCAAGCTCGGAAGAACGCAGCATTGTTTTTTGCTGCTGCATTTGTCTTTAGAGCAGTTCTTGATGCCTTTGATGCCCAGGATGGATTACAGAAATTACTGGGTCTTCTACATGATGCTGCTTTGCTAAGATTGGGAGTAAATTCTGGGGCATTGGGCTTATCTAACTCAGGATCACTCCGAAATGATCGATCGTCTGCAGAAGTGCTGACATCGTCTGAGAAGCAGATAGCCTATCATACTTGTGTTGCTTTACGACAATACTTCAGGGCTCATCTCCTCTTGTTAGTGGATTCTATTCGTCCAAACAAAAGCCATCGTAGTGCTACCAGGAATATTCCAAGTTTAAGGGCAGCATACAAGCCGCTTGACATTAGCAATGAGGCAATGGATGTTGTATTCCTACAATTACAAAAAGACCGGAAGCTGGGTCCTGCATTTGTGAGAACACGTTGGCCAGCCGTCGACAAGTTCTTGGTCTGTAATGGACATATTACTATGCTAGAATTGTGTCAGGCTCCACCTGTGGAACGGTATCTGCATGATTTGCTCCAGTATGCATTGGGTGTTCTTCACATTGTTACATTGGTACCTAGTAGTCGCAAGATGATAGTAAATGCAACATTAAGCAATAATCGTGCTGGTACAGCAGTCATTTTGGATGCAGCAAGTATTGCTAGCAATCATGTTGAACCTGAGATAATTCAGCCTGCTTTAAATGTATTAGTCAACTTTGTCTGCCCTCCACCTTCTATTAGCTATAAGCCAGCTTTGGTTACACAAGGTCAGCAGTCTACTTCTACCCAAACATCCAATGATCGAAACAGTACCGCAACAGTTAATACACAAACTGTTAATAGCACTCCACAGACTCCTGTTCTGACTGCTACTTCAGGATTGGTTGGAGACCATAGAATATCTCTGGGTGCTGGAGCAGGCTGTGCTGGCCTTGCTGCACAACTAGTACAAGGATATCGTCAAGCAAGAGAGGCTGTTCGTGCTAATAATGGAATAAAGGTTCTTTTGCATCTCCTCCAACCACGCATATATTCACCTCCTGCTGCTCTGGACTGTCTCCGTGCTCTAGCATGTCGAGTCCTCCTTGGTTTAGCCAGAGATGATGCTATTGCACACATATTGACAAAGCTACAGGTTGGGAAAAAGCTGTCAGAACTAATTCGGGATTCTGGCAGCCAGACACTTGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAAGCTGCGATTGAGTTAATTGGGATTGTCACTAATTCAGGGCGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCTACCTTAAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCCACTCCTATAACATATCATTCGAGGGAACTTTTGCTCCTAATTCATGAACATCTTCAGGCATCTGGATTGTCACAAACTGCTTCTAGGTTGCTTAAAGAGGCTCAATTGAAACCTTTGCCATCTCTGGTTGCTCCATCTTCTCTTGTACAACAACCCTCCGCCCAAGAAGCTCCTCCAGTACAACTTCAGTGGCCTTCTGGTCGTGCTCCTGGATTTCTATCTAACAAATTAAAGCTTAATGCAAGGGATGAGGATGCCAGCACAAAGAGTGATTTAGTTTTCTCTTCAAAGAAAAAATCACTGACCTTCTCTTCTTCCTTTGGTTCAAATTCAAGGCATCAACTTGTAGATTCTCGGCAGCCATCTGCCAGAAAATGGTTAAGCAAGTCTTCAGAAACTACAACAGTATTGGAGACTCCATCAGAACCTTCAGTGAAACATAACATTGATGCTGAATCTCAGTATAAGACTCCAATCATCTTGCCAATGAAACGTAAATTATCTGATTTGAAGGATATAGGAGTGTTGTCATCATCTGGAAAGCGACTAAATGCTGGGGATCAAGGACTTTGTTCTCCTATTTTTTCAACTCCAAGTGTAATTCGTAAAAGTAGCCTGCAGTCTGATGTTATTGGGCTTTCTACACCAAGTTCCAACCTGAGAAATCAACAAGGACGTTGTACATCTGACTATGTGGATGACAATCAATGCAGTATGTCAAATCTAGGTCAGGTTACACCATCCTCCCTTGGAATAAATGACCTCCAGCCCAACAACCCAGAACGAATTACATTAGATTCTCTGGTGGTTCAGTATCTGAAACATCAGCATCGCCAATGCCCAGCTCCTATTACCACTCTTCCCCCTCTATCTCTTTTACACCCTCATGTTTGTCCTGAACCCAAGCGAAGCCTTGATGCCCCTGCTAATGTGACAGCTCGTCTTGGTACACGCGAATTTAAATTTATGTATGGTGGAGTACATGGGAATCGCAGGGATCGTCAATTTGTTTATAGTCGATTCAGACCATGGCGCACTTGTCGTGATGATGATGCTGGTGCCTTATTAACATGCATTACGTTTTTTGGGGACTCTTCTCATATTGCTGTTGGAAGCCACAATGGAGAGCTCAAAATTTTTGAATCTGACAACAACAACGTGGTGGAGGGCTTTACAGGTCACCAGTATCCATTGACACATGTTCAGTCTTTTGTTTCTGGTGAGAACCAGCTGTTGCTTTCTTCAAGCTCCCAAGATGTAAGGTTGTGGGATGCTTCTTCAATTTTAAGTGGTCCTACCCATCAATTTGAAGGGTGCAAGGCTGCCAGGTTTAGCAACTCCGGGAATGTTTTTGCAGCTTTGTCATCAGAATCTGCCCAACGGGAAATCCTCTTGTATGATATCCAGACAAGTCAGCTAAAGTCCAAGTTGTCAGATACTTCTACAACTTTTACAGGCAGGGGTCATGTTTATTCTTTAATTCATTTCAGCCCTTCTGATTCAATGTTGCTTTGGAATGGTGTCTTATGGGACCGGCGGGTTTCTGGGCCTGTTCATCGCTTTGACCAGTTCACAGACTATGGGGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTATAAACTCTGAAGTGTGGGATCTGCGCAAGTTCAGACTGCTTCGTAGTGTACCTTCATTAGATCAAACAACAATAACATTTAATGCTCATGGCGATGTGATATATGCTATCCTAAGGAGAAATCTTGAGGATGTAATGTCAGCAGTTCACACACGTCGTGTCAAGCATCCTCTTTTTGCAGCTTTCCGCTCAGTGGATGCAGTGAATTATTCTGATATTGCTACTATCCCAGTGGATCGCTGTGTTCTTGATTTCACAACTGAGCCAACAGATTCATTTGTTGGGTTGGTTACAATGGACGATCAAGATGAGATGTATGCATCTGCCAGAATCTATGAAATTGGTCGTAGGAGGCCAACTGATGATGATTCTGATCCAGATGATGCAGAGAGTGAGGAGGAAGATGAGGATGATGATGAAGATGCTGACGGGGATCCGCTTTTAGGCCCCGGTTTTGGTGGGGACAGTGACAGTGATGCTGATGACATAAGTAATGATGATGATAGTGTTAGTGAGCTTGATGATGAAGATGGAGATTTCATTATGGATGCTGGAGACTTCGAAGGAGGAACTGACATATTGGACCTTGTAACAGGTGGTGTTGAGGATGATGATGATAGTGAAGTACTTGAATCTTTTAGTAGTGGCGAAGAAGATTTTGGCTTTGAGTATTAA 5730 0.4389 MDDESNRSHGQAPPSPPPPEPHSYDGDGEEDDDDDDEEEEEVEESKKEEEEMIAKVNKLMERITGASDNPKPTVLHALASILETQESRYMEENDHSSSSNARASHNVGRLGSIIRENDEFFELISSKFLSETRYTTSIRAAAVRLLLICSLTWIYPHVFEESVLDNIKHWVIDENSSLSAEEQILKRNPGRRDASDSEMLKTYSTGLLAVCLASGGQVVEDVLTSGLSAKLMHYLRSRVLGETSSSQKDINNLSESRHASGNTSLKGRDDGRSRCRQVLESSNLDDTRTIDERSLDDRILVRDLDKSISVQTCQEDSWIDGELHDGLSEGADICEVDIDEEDRLQCRDLCDGRIKYGDHEDNARGDSSRRRANHGWGRSRWTGRVNEGTVESEPVLSSPGSSGRLGQGKSVRDRSILRNVDIRVVPDSKKIARITSEANVLEREDNDDCFQECCIGSKDISDLVRKAVQAAEAEARSANAPEEAVKAAGDAAAELVKTAASEEFKSTNDEEAAVLAASKAASTVIDAASAAENAGVKEIEFGEEVEDYFIPDIQSLLQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHREASKVALLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMTQTFFGLSSCLFTIGSLQGIMERVCALSSDVIYRLVELALQLLECNQDQARKNAALFFAAAFVFRAVLDAFDAQDGLQKLLGLLHDAALLRLGVNSGALGLSNSGSLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSHRSATRNIPSLRAAYKPLDISNEAMDVVFLQLQKDRKLGPAFVRTRWPAVDKFLVCNGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNATLSNNRAGTAVILDAASIASNHVEPEIIQPALNVLVNFVCPPPSISYKPALVTQGQQSTSTQTSNDRNSTATVNTQTVNSTPQTPVLTATSGLVGDHRISLGAGAGCAGLAAQLVQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDAIAHILTKLQVGKKLSELIRDSGSQTLGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLSQTASRLLKEAQLKPLPSLVAPSSLVQQPSAQEAPPVQLQWPSGRAPGFLSNKLKLNARDEDASTKSDLVFSSKKKSLTFSSSFGSNSRHQLVDSRQPSARKWLSKSSETTTVLETPSEPSVKHNIDAESQYKTPIILPMKRKLSDLKDIGVLSSSGKRLNAGDQGLCSPIFSTPSVIRKSSLQSDVIGLSTPSSNLRNQQGRCTSDYVDDNQCSMSNLGQVTPSSLGINDLQPNNPERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPANVTARLGTREFKFMYGGVHGNRRDRQFVYSRFRPWRTCRDDDAGALLTCITFFGDSSHIAVGSHNGELKIFESDNNNVVEGFTGHQYPLTHVQSFVSGENQLLLSSSSQDVRLWDASSILSGPTHQFEGCKAARFSNSGNVFAALSSESAQREILLYDIQTSQLKSKLSDTSTTFTGRGHVYSLIHFSPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTTITFNAHGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRSVDAVNYSDIATIPVDRCVLDFTTEPTDSFVGLVTMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDEDADGDPLLGPGFGGDSDSDADDISNDDDSVSELDDEDGDFIMDAGDFEGGTDILDLVTGGVEDDDDSEVLESFSSGEEDFGFEY 1909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 246 272 - -
Gabi4674g00006 1909 PANTHER VPRBP PROTEIN-RELATED 43 1904 IPR033270 GO:0016567
Gabi4674g00006 1909 Gene3D - 1486 1811 IPR015943 GO:0005515
Gabi4674g00006 1909 ProSiteProfiles LIS1 homology (LisH) motif profile. 1151 1183 IPR006594 GO:0005515
Gabi4674g00006 1909 SMART WD40_4 1485 1526 IPR001680 GO:0005515
Gabi4674g00006 1909 SMART WD40_4 1574 1612 IPR001680 GO:0005515
Gabi4674g00006 1909 SMART WD40_4 1529 1569 IPR001680 GO:0005515
Gabi4674g00006 1909 FunFam DDB1-and CUL4-associated factor homolog 1 1483 1811 - -
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 1844 1868 - -
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 391 405 - -
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 1810 1830 - -
Gabi4674g00006 1909 Coils Coil 35 62 - -
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 1884 1898 - -
Gabi4674g00006 1909 SMART Lish 1151 1183 IPR006594 GO:0005515
Gabi4674g00006 1909 SUPERFAMILY WD40 repeat-like 1501 1722 IPR036322 GO:0005515
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 246 261 - -
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 1796 1871 - -
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 1248 1268 - -
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 357 410 - -
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 357 373 - -
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 955 983 - -
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 1 50 - -
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 25 47 - -
Gabi4674g00006 1909 MobiDBLite consensus disorder prediction 1884 1909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4674g00006 Gabi-Chr4674 45390 55883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4674g00006 1513 1719 U-box Gene Family AT2G33340 23.894 4.99e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4674g00006 K11789 - gmx:100796030 2622.42