Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4674g00005 ATGGACGACGAATCGAATCGTAGCCACGGCCAAGCTCCGCCGTCACCTCCGCCGCCGGAACCACATTCGTATGACGGTGACGGCGAGGAAGATGATGACGATGATGATGAAGAAGAAGAAGAGGTGGAGGAGTCTAAGAAGGAAGAAGAGGAGATGATTGCAAAGGTTAACAAGCTAATGGAGAGGATAACTGGTGCTTCTGATAACCCTAAACCAACCGTTCTCCACGCCCTTGCCTCCATTCTCGAAACCCAAGAGTCTCGATACATGGAAGAGAATGACCATTCTTCATCCAGCAACGCCCGTGCTTCCCATAACGTTGGGCGACTTGGGAGCATAATCCGGGAGAATGATGAGTTCTTTGAGTTGATATCTTCAAAGTTTCTGTCAGAAACAAGGTACACAACTTCCATTCGGGCTGCTGCTGTCAGGCTTCTCCTGATCTGTTCGCTAACTTGGATTTATCCTCATGTTTTTGAAGAATCTGTCCTGGATAACATCAAACATTGGGTAATAGATGAGAATTCTAGTTTGTCTGCTGAGGAGCAAATTCTGAAGCGTAATCCAGGGAGAAGGGATGCTTCAGATTCTGAAATGTTGAAAACATATTCTACTGGACTCCTTGCTGTGTGTTTAGCGAGTGGAGGTCAAGTGGTTGAAGATGTCTTGACATCTGGCTTGTCAGCCAAGCTTATGCATTATCTACGTTCGCGTGTGCTGGGGGAGACAAGTAGCAGTCAGAAAGACATTAATAATTTATCAGAGAGTAGGCATGCATCTGGGAATACTTCATTGAAAGGCCGAGATGATGGTCGCAGTAGATGTCGCCAGGTCCTGGAATCAAGTAATTTAGATGATACAAGAACGATTGATGAGAGATCATTAGATGATCGAATTCTTGTTAGGGATCTAGATAAAAGCATCAGTGTACAAACTTGCCAAGAAGATTCTTGGATAGATGGTGAACTCCATGATGGGTTGAGTGAAGGAGCTGACATCTGTGAGGTAGACATTGATGAAGAGGACAGATTGCAGTGCAGAGATTTATGTGATGGAAGGATAAAATATGGTGACCATGAAGACAATGCTAGAGGTGACTCTTCGAGACGGCGTGCAAACCATGGATGGGGAAGATCCAGATGGACGGGTAGGGTCAATGAAGGGACTGTAGAAAGTGAACCAGTTTTGTCATCCCCTGGTTCCAGTGGTCGATTAGGACAGGGAAAGAGTGTTAGAGATAGGAGCATATTGAGGAATGTTGATATCAGAGTCGTACCTGATTCTAAGAAGATTGCCAGGATTACTTCTGAGGCAAATGTTTTGGAAAGAGAGGATAATGATGATTGTTTCCAAGAGTGCTGTATTGGAAGTAAAGATATCTCTGATCTTGTTAGGAAAGCAGTCCAAGCTGCAGAAGCTGAAGCTAGATCTGCCAATGCACCAGAAGAAGCGGTCAAGGCAGCTGGTGATGCTGCTGCTGAACTTGTTAAAACTGCTGCTTCAGAGGAATTTAAATCCACTAATGATGAAGAAGCTGCTGTTTTAGCTGCTTCAAAAGCTGCATCAACTGTTATTGATGCTGCATCTGCCGTTGAATTTTCTAGGAGCTCCATCAGCATCAATAATGAGGCTGAGAATGCAGGTGTCAAAGAAATAGAATTTGGTGAGGAAGTTGAAGATTATTTCATCCCGGATATTCAATCACTTCTGCAGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGCTACTTGGAGAATATGTAGAAGTTCTTGGCCCTGTATTACATGAGAAGGGGGTTGATGTCTGTCTTGCACTGTTGCAACAGAATTCTAAACATCGTGAGGCTTCCAAAGTTGCCCTTCTGTTGCCTGATGTTATGAAACTGATCTGTGCTTTGGCTGCTCATAGGAAGTTTGCTGCACTATTTGTGGACCGTGGGGGCATGCAAAAGCTTCTTGCTGTTCCTAGAATGACTCAAACTTTCTTTGGCCTTTCTTCTTGTCTATTTACTATCGGTTCTCTGCAGGGTATAATGGAACGGGTTTGTGCTCTTTCGTCAGATGTTATTTATCGTTTGGTTGAGTTGGCTCTCCAGCTCCTTGAGTGCAACCAAGACCAAGCTCGGAAGAACGCAGCATTGTTTTTTGCTGCTGCATTTGTCTTTAGAGCAGTTCTTGATGCCTTTGATGCCCAGGATGGATTACAGAAATTACTGGGTCTTCTACATGATGCTGCTTTGCTAAGATTGGGAGTAAATTCTGGGGCATTGGGCTTATCTAACTCAGGATCACTCCGAAATGATCGATCGTCTGCAGAAGTGCTGACATCGTCTGAGAAGCAGATAGCCTATCATACTTGTGTTGCTTTACGACAATACTTCAGGGCTCATCTCCTCTTGTTAGTGGATTCTATTCGTCCAAACAAAAGCCATCGTAGTGCTACCAGGAATATTCCAAGTTTAAGGGCAGCATACAAGCCGCTTGACATTAGCAATGAGGCAATGGATGTTGTATTCCTACAATTACAAAAAGACCGGAAGCTGGGTCCTGCATTTGTGAGAACACGTTGGCCAGCCGTCGACAAGTTCTTGGTCTGTAATGGACATATTACTATGCTAGAATTGTGTCAGGCTCCACCTGTGGAACGGTATCTGCATGATTTGCTCCAGTATGCATTGGGTGTTCTTCACATTGTTACATTGGTACCTAGTAGTCGCAAGATGATAGTAAATGCAACATTAAGCAATAATCGTGCTGGTACAGCAGTCATTTTGGATGCAGCAAGTATTGCTAGCAATCATGTTGAACCTGAGATAATTCAGCCTGCTTTAAATGTATTAGTCAACTTTGTCTGCCCTCCACCTTCTATTAGCTATAAGCCAGCTTTGGTTACACAAGGTCAGCAGTCTACTTCTACCCAAACATCCAATGGTCCTCTATTGGAAACTAGAGATAGAACTGCTGAACGGAATGTCTCAGATCGATCTGTTAATATTTCCAGTCAGTCTGATTCTAGGGAGCGGAACGGGGAAACTAGTGCTGTAGATCGAAACAGTACCGCAACAGTTAATACACAAACTGTTAATAGCACTCCACAGACTCCTGTTCTGACTGCTACTTCAGGATTGGTTGGAGACCATAGAATATCTCTGGGTGCTGGAGCAGGCTGTGCTGGCCTTGCTGCACAACTAGTACAAGGATATCGTCAAGCAAGAGAGGCTGTTCGTGCTAATAATGGAATAAAGGTTCTTTTGCATCTCCTCCAACCACGCATATATTCACCTCCTGCTGCTCTGGACTGTCTCCGTGCTCTAGCATGTCGAGTCCTCCTTGGTTTAGCCAGAGATGATGCTATTGCACACATATTGACAAAGCTACAGGTTGGGAAAAAGCTGTCAGAACTAATTCGGGATTCTGGCAGCCAGACACTTGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAAGCTGCGATTGAGTTAATTGGGATTGTCACTAATTCAGGGCGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCTACCTTAAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCCACTCCTATAACATATCATTCGAGGGAACTTTTGCTCCTAATTCATGAACATCTTCAGGCATCTGGATTGTCACAAACTGCTTCTAGGTTGCTTAAAGAGGCTCAATTGAAACCTTTGCCATCTCTGGTTGCTCCATCTTCTCTTGTACAACAACCCTCCGCCCAAGAAGCTCCTCCAGTACAACTTCAGTGGCCTTCTGGTCGTGCTCCTGGATTTCTATCTAACAAATTAAAGCTTAATGCAAGGGATGAGGATGCCAGCACAAAGAGTGATTTAGTTTTCTCTTCAAAGAAAAAATCACTGACCTTCTCTTCTTCCTTTGGTTCAAATTCAAGGCATCAACTTGTAGATTCTCGGCAGCCATCTGCCAGAAAATGGTTAAGCAAGTCTTCAGAAACTACAACAGTATTGGAGACTCCATCAGAACCTTCAGTGAAACATAACATTGATGCTGAATCTCAGTATAAGACTCCAATCATCTTGCCAATGAAACGTAAATTATCTGATTTGAAGGATATAGGAGTGTTGTCATCATCTGGAAAGCGACTAAATGCTGGGGATCAAGGACTTTGTTCTCCTATTTTTTCAACTCCAAGTGTAATTCGTAAAAGTAGCCTGCAGTCTGATGTTATTGGGCTTTCTACACCAAGTTCCAACCTGAGAAATCAACAAGGACGTTGTACATCTGACTATGTGGATGACAATCAATGCAGTATGTCAAATCTAGGTCAGGTTACACCATCCTCCCTTGGAATAAATGACCTCCAGCCCAACAACCCAGAACGAATTACATTAGATTCTCTGGTGGTTCAGTATCTGAAACATCAGCATCGCCAATGCCCAGCTCCTATTACCACTCTTCCCCCTCTATCTCTTTTACACCCTCATGTTTGTCCTGAACCCAAGCGAAGCCTTGATGCCCCTGCTAATGTGACAGCTCGTCTTGGTACACGCGAATTTAAATTTATGTATGGTGGAGTACATGGGAATCGCAGGGATCGTCAATTTGTTTATAGTCGATTCAGACCATGGCGCACTTGTCGTGATGATGATGCTGGTGCCTTATTAACATGCATTACGTTTTTTGGGGACTCTTCTCATATTGCTGTTGGAAGCCACAATGGAGAGCTCAAAATTTTTGAATCTGACAACAACAACGTGGTGGAGGGCTTTACAGGTCACCAGTATCCATTGACACATGTTCAGTCTTTTGTTTCTGGTGAGAACCAGCTGTTGCTTTCTTCAAGCTCCCAAGATGTAAGGTTGTGGGATGCTTCTTCAATTTTAAGTGGTCCTACCCATCAATTTGAAGGGTGCAAGGCTGCCAGGTTTAGCAACTCCGGGAATGTTTTTGCAGCTTTGTCATCAGAATCTGCCCAACGGGAAATCCTCTTGTATGATATCCAGACAAGTCAGCTAAAGTCCAAGTTGTCAGATACTTCTACAACTTTTACAGGCAGGGGTCATGTTTATTCTTTAATTCATTTCAGCCCTTCTGATTCAATGTTGCTTTGGAATGGTGTCTTATGGGACCGGCGGGTTTCTGGGCCTGTTCATCGCTTTGACCAGTTCACAGACTATGGGGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTATAAACTCTGAAGTGTGGGATCTGCGCAAGTTCAGACTGCTTCGTAGTGTACCTTCATTAGATCAAACAACAATAACATTTAATGCTCATGGCGATGTGATATATGCTATCCTAAGGAGAAATCTTGAGGATGTAATGTCAGCAGTTCACACACGTCGTGTCAAGCATCCTCTTTTTGCAGCTTTCCGCTCAGTGGATGCAGTGAATTATTCTGATATTGCTACTATCCCAGTGGATCGCTGTGTTCTTGATTTCACAACTGAGCCAACAGATTCATTTGTTGGGTTGGTTACAATGGACGATCAAGATGAGATGTATGCATCTGCCAGAATCTATGAAATTGGTCGTAGGAGGCCAACTGATGATGATTCTGATCCAGATGATGCAGAGAGTGAGGAGGAAGATGAGGATGATGATGAAGATGCTGACGGGGATCCGCTTTTAGGCCCCGGTTTTGGTGGGGACAGTGACAGTGATGCTGATGACATAAGTAATGATGATGATAGTGTTAGTGAGCTTGATGATGAAGATGGAGATTTCATTATGGATGCTGGAGACTTCGAAGGAGGAACTGACATATTGGACCTTGTAACAGGTGGTGTTGAGGATGATGATGATAGTGAAGTACTTGAATCTTTTAGTAGTGGCGAAGAAGATTTTGGCTTTGAGTATTAA 5883 0.4387 MDDESNRSHGQAPPSPPPPEPHSYDGDGEEDDDDDDEEEEEVEESKKEEEEMIAKVNKLMERITGASDNPKPTVLHALASILETQESRYMEENDHSSSSNARASHNVGRLGSIIRENDEFFELISSKFLSETRYTTSIRAAAVRLLLICSLTWIYPHVFEESVLDNIKHWVIDENSSLSAEEQILKRNPGRRDASDSEMLKTYSTGLLAVCLASGGQVVEDVLTSGLSAKLMHYLRSRVLGETSSSQKDINNLSESRHASGNTSLKGRDDGRSRCRQVLESSNLDDTRTIDERSLDDRILVRDLDKSISVQTCQEDSWIDGELHDGLSEGADICEVDIDEEDRLQCRDLCDGRIKYGDHEDNARGDSSRRRANHGWGRSRWTGRVNEGTVESEPVLSSPGSSGRLGQGKSVRDRSILRNVDIRVVPDSKKIARITSEANVLEREDNDDCFQECCIGSKDISDLVRKAVQAAEAEARSANAPEEAVKAAGDAAAELVKTAASEEFKSTNDEEAAVLAASKAASTVIDAASAVEFSRSSISINNEAENAGVKEIEFGEEVEDYFIPDIQSLLQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHREASKVALLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMTQTFFGLSSCLFTIGSLQGIMERVCALSSDVIYRLVELALQLLECNQDQARKNAALFFAAAFVFRAVLDAFDAQDGLQKLLGLLHDAALLRLGVNSGALGLSNSGSLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSHRSATRNIPSLRAAYKPLDISNEAMDVVFLQLQKDRKLGPAFVRTRWPAVDKFLVCNGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNATLSNNRAGTAVILDAASIASNHVEPEIIQPALNVLVNFVCPPPSISYKPALVTQGQQSTSTQTSNGPLLETRDRTAERNVSDRSVNISSQSDSRERNGETSAVDRNSTATVNTQTVNSTPQTPVLTATSGLVGDHRISLGAGAGCAGLAAQLVQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDAIAHILTKLQVGKKLSELIRDSGSQTLGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLSQTASRLLKEAQLKPLPSLVAPSSLVQQPSAQEAPPVQLQWPSGRAPGFLSNKLKLNARDEDASTKSDLVFSSKKKSLTFSSSFGSNSRHQLVDSRQPSARKWLSKSSETTTVLETPSEPSVKHNIDAESQYKTPIILPMKRKLSDLKDIGVLSSSGKRLNAGDQGLCSPIFSTPSVIRKSSLQSDVIGLSTPSSNLRNQQGRCTSDYVDDNQCSMSNLGQVTPSSLGINDLQPNNPERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPANVTARLGTREFKFMYGGVHGNRRDRQFVYSRFRPWRTCRDDDAGALLTCITFFGDSSHIAVGSHNGELKIFESDNNNVVEGFTGHQYPLTHVQSFVSGENQLLLSSSSQDVRLWDASSILSGPTHQFEGCKAARFSNSGNVFAALSSESAQREILLYDIQTSQLKSKLSDTSTTFTGRGHVYSLIHFSPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTTITFNAHGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRSVDAVNYSDIATIPVDRCVLDFTTEPTDSFVGLVTMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDEDADGDPLLGPGFGGDSDSDADDISNDDDSVSELDDEDGDFIMDAGDFEGGTDILDLVTGGVEDDDDSEVLESFSSGEEDFGFEY 1960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 246 272 - -
Gabi4674g00005 1960 ProSiteProfiles LIS1 homology (LisH) motif profile. 1202 1234 IPR006594 GO:0005515
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 963 1034 - -
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 391 405 - -
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 1935 1949 - -
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 1861 1881 - -
Gabi4674g00005 1960 SUPERFAMILY WD40 repeat-like 1552 1771 IPR036322 GO:0005515
Gabi4674g00005 1960 Coils Coil 35 62 - -
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 1847 1922 - -
Gabi4674g00005 1960 PANTHER VPRBP PROTEIN-RELATED 43 1955 IPR033270 GO:0016567
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 993 1034 - -
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 246 261 - -
Gabi4674g00005 1960 SMART WD40_4 1580 1620 IPR001680 GO:0005515
Gabi4674g00005 1960 SMART WD40_4 1625 1663 IPR001680 GO:0005515
Gabi4674g00005 1960 SMART WD40_4 1536 1577 IPR001680 GO:0005515
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 357 410 - -
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 357 373 - -
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 1935 1960 - -
Gabi4674g00005 1960 SMART Lish 1202 1234 IPR006594 GO:0005515
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 1 50 - -
Gabi4674g00005 1960 FunFam DDB1-and CUL4-associated factor homolog 1 1534 1862 - -
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 1895 1919 - -
Gabi4674g00005 1960 Gene3D - 1537 1862 IPR015943 GO:0005515
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 25 47 - -
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 963 982 - -
Gabi4674g00005 1960 MobiDBLite consensus disorder prediction 1299 1341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4674g00005 Gabi-Chr4674 45390 55883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4674g00005 1564 1770 U-box Gene Family AT2G33340 23.894 5.60e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4674g00005 K11789 - gmx:100796030 2712.18