Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4672g00004 ATGGTAGAAGTGAAGATTGAGGCAAGTGAACCAATTGTGAGTGATCAAGCCTTGGAGGAGCCAATGGAACTTAATTTGGGTAACATTGATGATTGGAAGAAATTACCAAGTGTCATATCAAGAAAGGTTGGTGTGGATAAGCGAGCTAGAGGAAAGCTTGATTGTGGAACTTGGTGCAGGACAAAGGTAGAATTGGAAACAATAAAGTATCGTTGTGTCATTAGAGAAAGGGCTAATGGACAAGCACTAGGGGCAAGGTTGAGTTTAAGGGAGATCAACAGCCCTAGCAGAACATCTTATTATCCTAAAGTCAACCTACATGTAGAAGATAAACTGATTGGGTTTAATCTTCAGGTGATGATGGATAATGGCATCATTCGTGTCACATTGGCGAGGCCCGAGGGCACTGTCCTTCGAATATTATATAATGGAATAGATAATGTGCTTGAAGCTCGCAACAAATATGATGATAGAGGGTATTTTGACGTTGTTTGGAATGTACCCGGAAATCATGCTAAAGTTTGGAGAATCTATGGGAACAAATTTTCTGTTATAGAGGCAAATGAGGATCAAGTAGAGGTTTCATTTTCAAGAACGTGGGACATGGATGGCTCAAGTCTCCCCATAAACGTTGAAATTAGGTATATATTACGTAGAGGTAGTTCAGGAGTATACATATACGCTATAGTTGAGCGTTCCGAAGGTTTTCCCGCATTGGAGATTGATCACATTAGGATCGTTTTCAAGCTACAGGAGGACAGGTTCCACTTCATGGCTATAGCAGATGATAGGCAGCGAGTGATGCCAACCCTAGAAGAAAGATCTATTGGGCAACGCCTTGATTATCCTGAAGCTGTTATAATAAATCACCCTAGTAACCTTGCAATTCAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGAGAACAAAGATAATAATCTTCATGGGTGGATTAACTTTGACACCAACTTCAATGAATCGGTGGGCTTCTGGATGATAACACCAAGTAATGAGTTCCGTAATGGTGGGCCAATCCATCAAGGCCTCACTTCTCATGTTGGCCCTGTCACTCTCAATATACTTCATACCACCCACTACGCCGGGAAGGAGATAACAATGGCATTTCAAGAAGGGGAGCCTTTCAAGAAAGTTTATGGCCCCTTTTTTGTGTATCTCAACTCTGTTTCAAGTGGCCATGATGATTCACAAGTCCTCTGGAATGATGCTAAACAACAGCTGTCTGAGGAAATCAAAATCTGGCCCTATGATTTCCCAAAATCAGATGATTTTTTCCCACCCAATAAACGGGGAACAGTGGAAGGAAAATTGCTAATCCAAGACCGATACATCAAAGGAGGAAGGTTTCTATATGGTGACAATGCTTATGTTGGTCTGGCTCTGCCTGGAGACGTGGGATCGTGGCAAAGACAAAGCAAGGGTTACCAATTCTGGACTCAAGCTGATAAGATTGGCCACTTCCAAATTAAAAATGTTGTACCGGGCGACTACAATTTGTATGCATGGGTTCCTGGCATTTTTGGAGATTACAAATATAACACTACTGTAACCATCACACCAGGATGTGTCATCCAATTGGGTTCACTAATATACATGCCTCCAAGAAATGGACCTACCATATGGGAAATTGGCATCCCTGATCGCTCTGCTGCAGAGTTCTATGTTCCAGACCCTTATCCTAACCTCATTAACCGATTATTCATTGGGAAGCCAAAACACAACTTTAGGCAATATGGATTGTGGCAACGTTACACCGAATTATATCCAAATCAGAACCTCGTTTACAATATTGGTGTTAGTGATTATAGTAAGGATTGGTTTTATGCTCATGTTACCAGGAATATAGGAAACAACAAATTTCGCCCCACGACATGGGAGATTAGATTTCATCTCCCATTTGTTATAAGAGGAAACTACACACTACAACTTGCCTTGGCCTCAGCCGAAAGTTCTAACTTGGTGGTTCGGTTCAATAACCCAGTGGCTCTTCATGAACACTTTTCTACGGGATTAATAGGCCAAGACAACGCTATAGCAAGACATGGGATCCATGGATTGTACTGGCCTTACAGCATTGAAGTACCTAGCCATCTATTGGTTGAAGGAAACAACACCATTTATCTGAGGCAGGCAAAAGGTCTAACTCGTTTCCAAGGAGTTATGTATGACTACATCCGTTTGGAAAGACCTGAAACTTCAAGTTTAAATTGA 2232 0.4158 MVEVKIEASEPIVSDQALEEPMELNLGNIDDWKKLPSVISRKVGVDKRARGKLDCGTWCRTKVELETIKYRCVIRERANGQALGARLSLREINSPSRTSYYPKVNLHVEDKLIGFNLQVMMDNGIIRVTLARPEGTVLRILYNGIDNVLEARNKYDDRGYFDVVWNVPGNHAKVWRIYGNKFSVIEANEDQVEVSFSRTWDMDGSSLPINVEIRYILRRGSSGVYIYAIVERSEGFPALEIDHIRIVFKLQEDRFHFMAIADDRQRVMPTLEERSIGQRLDYPEAVIINHPSNLAIQGEVDDKYQYSCENKDNNLHGWINFDTNFNESVGFWMITPSNEFRNGGPIHQGLTSHVGPVTLNILHTTHYAGKEITMAFQEGEPFKKVYGPFFVYLNSVSSGHDDSQVLWNDAKQQLSEEIKIWPYDFPKSDDFFPPNKRGTVEGKLLIQDRYIKGGRFLYGDNAYVGLALPGDVGSWQRQSKGYQFWTQADKIGHFQIKNVVPGDYNLYAWVPGIFGDYKYNTTVTITPGCVIQLGSLIYMPPRNGPTIWEIGIPDRSAAEFYVPDPYPNLINRLFIGKPKHNFRQYGLWQRYTELYPNQNLVYNIGVSDYSKDWFYAHVTRNIGNNKFRPTTWEIRFHLPFVIRGNYTLQLALASAESSNLVVRFNNPVALHEHFSTGLIGQDNAIARHGIHGLYWPYSIEVPSHLLVEGNNTIYLRQAKGLTRFQGVMYDYIRLERPETSSLN 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4672g00004 743 FunFam Rhamnogalacturonate lyase B 433 533 - -
Gabi4672g00004 743 CDD RGL4_C 548 735 - -
Gabi4672g00004 743 SUPERFAMILY Galactose mutarotase-like 127 406 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gabi4672g00004 743 SUPERFAMILY Galactose-binding domain-like 543 735 IPR008979 -
Gabi4672g00004 743 SUPERFAMILY Starch-binding domain-like 432 534 IPR013784 GO:0030246
Gabi4672g00004 743 Gene3D - 543 735 - -
Gabi4672g00004 743 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 106 738 - -
Gabi4672g00004 743 CDD RGL4_M 436 536 IPR029413 -
Gabi4672g00004 743 Gene3D - 433 533 - -
Gabi4672g00004 743 Pfam Polysaccharide lyase family 4, domain II 460 532 IPR029413 -
Gabi4672g00004 743 Gene3D - 114 412 IPR014718 GO:0030246
Gabi4672g00004 743 CDD RGL4_N 116 398 - -
Gabi4672g00004 743 Pfam Rhamnogalacturonate lyase family 103 300 IPR010325 -
Gabi4672g00004 743 Pfam Polysaccharide lyase family 4, domain III 546 734 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4672g00004 Gabi-Chr4672 54416 66124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4672g00004 104 739 Polysaccharide Lyase AT1G09910 53.666 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4672g00004 K18195 - gmx:100792575 1069.68