Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4672g00001 ATGATTGCAACACGTTCTGCTTTGATGCTCCTCAATCTCCAAAACCCACCAATTCGCTACCAATTGTTCTCCCACTTCAAACATGCTCACACCTCGCTTTCTCTATTGAAAGCTCGATCTTTTTCTGTAACAAGAGCCTTTGGAAGCGCTGTTGCATCATTATCACCAGAAGATTCCAAGGGCAGAGACACTTTCTTTGCAGAAGAAAACGTTTTGTGGAGTTCACTTGGTCTCTCTGATACCATTTCTCGAGCTCTCTCTAACATTGGCCTCAAAAGACCCTCTCTCGTTCAGGCTTCTTCTATACCATCTGTGCTGTCAGGGAAGGATGTAATTATTGCAGCTGAGACTGGTAGTGGTAAGACATACAGTTACCTTGTTCCTCTAATTGATAAGCTAAGGGACAGCCAGGAACATTCTCTACATGCTGTATCTGATCAACAATTGTCTAGGTCCCGGAAAGTTCTGCTCGTTCTTTGTCCGAATGTGCAACTATGTGAGCAGGTAGTTAGGATGGCTAACAGTCTCTGTGGAGACAATGGTGAAACTATAGTTAGTGTTGCAGCCATTTGTGGCAGACAGGGATGGCCAATTCGGGAACCTGATATCATTGTAACAACACCTGCTGCTCTTCTGAATTATGTCGACCCTGATAGGACCCGCCGCATGGAATTTATGCGTGGTGTTAAATACGTGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAATTTACTCCGCTTTGATGAAAAACTCTTATCTAAAGAATCAGTAGCAGAGTTACCAATGAAACTGGAGTCGTCCTTGTCAACAGATGAAGCTTTAAAAGTTGAAGAGGAACTTCCAACCGAAGCCATCTCAGAGGAGGAGGAGGATGATGATGATAATGAGGATATTGTTGATATTAATAATGAAGCTGGATCTGTTAAACGAAGAGACTGGAGGAGAGTGAGGAAGTATTATGAACGTAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCAGTGAATGGAAAGAAAACAGCTGGAGCAATATTGAAACATATGTTTCCTGATGCTAACTGGGTTAGTGGAAACTATCTTCATTGTCACAATCCAAGATTGGAACAAAGATGGATAGAAGTTACGGTTGATACACAGGTGGATGAACTCATAAAGGCTGTGAGTCACGATTTCAGATCTGAAGATTTGGACAATGCTGGTGGCATTCGCAGAATAATGGTGTTCGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGTTATTGCTCCGATCTGGGATTGAATGTTCATGTTATCATAAGAATTGCACATTGGAGGAGCGAGCACAGACCTTAGTTGAATTTAACGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAATGTCTTACATGTTATTCAGGCAGATTTTGCTACTTCTGCAGTAGATTTTTTGCATAGGGTTGGTCGTACTGCTAGAGCTGGTCAATTTGGACTTGTTACTAGTATGTACACTGAATCCAACAGGGAGCTTGTTGATGCAGTTCGTCGAGCAGGGGAGCTTGGTCAACCTGTGGAGATGGCGTTTAGCAGGAAAAGAAGCTTCCGTAATAAGCTCAAAAAGAGGGCTGCTAACAAAGTCAGAGATTCAGCAACCATTAAAGAGAGTGTTGTAGCATGA 1716 0.4266 MIATRSALMLLNLQNPPIRYQLFSHFKHAHTSLSLLKARSFSVTRAFGSAVASLSPEDSKGRDTFFAEENVLWSSLGLSDTISRALSNIGLKRPSLVQASSIPSVLSGKDVIIAAETGSGKTYSYLVPLIDKLRDSQEHSLHAVSDQQLSRSRKVLLVLCPNVQLCEQVVRMANSLCGDNGETIVSVAAICGRQGWPIREPDIIVTTPAALLNYVDPDRTRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSKESVAELPMKLESSLSTDEALKVEEELPTEAISEEEEDDDDNEDIVDINNEAGSVKRRDWRRVRKYYERSKQYIFVAATLPVNGKKTAGAILKHMFPDANWVSGNYLHCHNPRLEQRWIEVTVDTQVDELIKAVSHDFRSEDLDNAGGIRRIMVFANTVEAVEAVAKLLLRSGIECSCYHKNCTLEERAQTLVEFNEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQFGLVTSMYTESNRELVDAVRRAGELGQPVEMAFSRKRSFRNKLKKRAANKVRDSATIKESVVA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4672g00001 571 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 83 542 - -
Gabi4672g00001 571 Gene3D - 56 360 IPR027417 -
Gabi4672g00001 571 CDD SF2_C_DEAD 378 516 - -
Gabi4672g00001 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 519 IPR027417 -
Gabi4672g00001 571 SMART helicmild6 427 507 IPR001650 -
Gabi4672g00001 571 Pfam Helicase conserved C-terminal domain 414 507 IPR001650 -
Gabi4672g00001 571 Pfam DEAD/DEAH box helicase 97 262 IPR011545 GO:0003676|GO:0005524
Gabi4672g00001 571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 102 362 IPR014001 -
Gabi4672g00001 571 CDD DEADc 82 263 - -
Gabi4672g00001 571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 555 IPR001650 -
Gabi4672g00001 571 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 71 99 IPR014014 GO:0003724
Gabi4672g00001 571 SMART ultradead3 90 381 IPR014001 -
Gabi4672g00001 571 Gene3D - 382 571 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4672g00001 Gabi-Chr4672 4218 9978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4672g00001 321 533 Eukaryotic Initiation Factors Gene Family AT5G11200 27.049 3.17e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4672g00001 - - gmx:100789323 907.516